C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | valine--tRNA ligase, mitochondrial isoform 3 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000475673  |
VARS2-002 |
ENSG00000206476 |
9606 | + |
CHR_HSCHR6_MHC_QBL_CTG1:30897815-30916043  |
retained_intron |
Expression PatternsNo expression data. |
Conserved Regions |
|---|
| Gene is not located within a conserved region. |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| No GO terms available. | ||
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000043674
|
Vars2-001 | protein_coding | Mus_musculus | 0 | 3031 |
|
ENSMUST00000165787
|
Vars2-003 | retained_intron | Mus_musculus | 0 | 2481 |
|
ENSMUST00000168922
|
Vars2-002 | nonsense_mediated_decay | Mus_musculus | 0 | 1676 |
|
ENSMUST00000160734
|
Gtf2h4-003 | protein_coding | Mus_musculus | 0 | 1371 |
|
ENSMUST00000160752
|
Gtf2h4-008 | nonsense_mediated_decay | Mus_musculus | 0 | 1325 |
|
ENSMUST00000001565
|
Gtf2h4-001 | protein_coding | Mus_musculus | 0 | 1304 |
|
ENSMUST00000164404
|
Vars2-004 | nonsense_mediated_decay | Mus_musculus | 0 | 1179 |
|
ENSMUST00000160039
|
Gtf2h4-009 | protein_coding | Mus_musculus | 0 | 699 |
|
ENSMUST00000162894
|
Gtf2h4-010 | retained_intron | Mus_musculus | 0 | 625 |
|
ENSMUST00000160535
|
Gtf2h4-011 | retained_intron | Mus_musculus | 0 | 623 |
|
ENSMUST00000171536
|
Vars2-009 | retained_intron | Mus_musculus | 0 | 556 |
|
ENSMUST00000164978
|
Vars2-007 | retained_intron | Mus_musculus | 0 | 525 |
|
ENSMUST00000169093
|
Vars2-011 | nonsense_mediated_decay | Mus_musculus | 0 | 508 |
|
ENSMUST00000164295
|
Vars2-005 | retained_intron | Mus_musculus | 0 | 468 |
|
ENSMUST00000165144
|
Vars2-008 | nonsense_mediated_decay | Mus_musculus | 0 | 446 |
|
ENSMUST00000168885
|
Vars2-010 | retained_intron | Mus_musculus | 0 | 401 |
|
ENSMUST00000162266
|
Gtf2h4-006 | protein_coding | Mus_musculus | 0 | 364 |
|
ENSMUST00000162604
|
Gtf2h4-005 | retained_intron | Mus_musculus | 0 | 315 |
|
ENSMUST00000159671
|
Gtf2h4-004 | retained_intron | Mus_musculus | 0 | 315 |
|
ENSMUST00000170701
|
Vars2-006 | retained_intron | Mus_musculus | 0 | 285 |
|
ENSMUST00000162927
|
Gtf2h4-012 | retained_intron | Mus_musculus | 0 | 274 |
|
ENSMUST00000174129
|
Vars2-012 | retained_intron | Mus_musculus | 0 | 263 |
|
ENSMUST00000159852
|
Gtf2h4-007 | protein_coding | Mus_musculus | 0 | 243 |
|
ENSMUST00000160711
|
Gtf2h4-002 | processed_transcript | Mus_musculus | 9.80909e-45 | 187 |
