C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: family with sequence similarity 188, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000476912 FAM188A-007 ENSG00000148481 9606 - 10:15778854-15782335 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENST00000476912
Transcript ID Muscle
ENST00000476912 1.517±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088I CIL_00088I_0001 VISTA 10:15191068-15798325
CIL_0002HM CIL_0002HM_0001 CGP 10:15513949-15860520
CIL_0002HH CIL_0002HH_0001 CGP 10:15778170-16513745

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000137082 Fam188a-014 retained_intron Mus_musculus 0 425
ENSMUST00000028105 Fam188a-001 protein_coding Mus_musculus 0 425
ENSMUST00000154899 Fam188a-006 protein_coding Mus_musculus 0 425
ENSMUST00000129489 Fam188a-002 nonsense_mediated_decay Mus_musculus 0 425
ENSMUST00000155530 Fam188a-005 nonsense_mediated_decay Mus_musculus 0 425
ENSMUST00000144645 Fam188a-004 nonsense_mediated_decay Mus_musculus 0 292
ENSMUST00000135397 Fam188a-016 nonsense_mediated_decay Mus_musculus 0 289
ENSMUST00000124603 Fam188a-008 nonsense_mediated_decay Mus_musculus 3e-30 135

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