C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GDP-mannose pyrophosphorylase A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000481170 GMPPA-013 ENSG00000144591 9606 + 2:219499775-219506987 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonLiverLungOvaryENST00000481170
Transcript ID Adipose Bladder Brain Breast Colon Liver Lung Ovary
ENST00000481170 0.387±0.00 0.118±0.00 0.419±0.00 0.474±0.00 0.401±0.20 0.064±0.00 0.226±0.00 0.925±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_0006O1 CIL_0006O1_0001 CGP 2:219434846-219506988
CIL_000415 CIL_000415_0002 CGP 2:219498867-219538772

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000131545 Gmppa-008 protein_coding Mus_musculus 0 514
ENSMUST00000144874 Gmppa-012 protein_coding Mus_musculus 0 514
ENSMUST00000133418 Gmppa-005 protein_coding Mus_musculus 0 514
ENSMUST00000113584 Gmppa-002 protein_coding Mus_musculus 0 514
ENSMUST00000037796 Gmppa-001 protein_coding Mus_musculus 0 514
ENSMUST00000143730 Gmppa-006 protein_coding Mus_musculus 0 472
ENSMUST00000188097 Gmppa-013 nonsense_mediated_decay Mus_musculus 0 340
ENSMUST00000140287 Gmppa-007 protein_coding Mus_musculus 0 339
ENSMUST00000145166 Gmppa-003 protein_coding Mus_musculus 1e-37 163

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