C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000566_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000068919-ENSDARG00000026499 CGP 7955 10:33617971-33743623
GeneTranscriptPositionBiotype
ENSDARG00000026499 (ppm1e)
protein phosphatase 1E (PP2C domain containing) 		ENSDART00000063551 (ppm1e-001) 33637880-33743623 protein_coding
ENSDARG00000043287 (ATG101)
autophagy related 101 		ENSDART00000063544 (ATG101-001) 33612287-33615507 protein_coding
ENSDART00000126727 (ATG101-003) 33612287-33618550 protein_coding
ENSDART00000141013 (ATG101-002) 33612287-33615528 protein_coding
ENSDARG00000068919 (rad51c)
rad51 homolog C (S. cerevisiae) 		ENSDART00000099841 (rad51c-201) 33617971-33627178 protein_coding
ENSDART00000138460 (rad51c-001) 33617971-33627299 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_000566_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000108384-ENSG00000175175 CGP 9606 17:58692573-58985176
GeneTranscriptPositionBiotype
ENSG00000108384 (RAD51C)
RAD51 paralog C 		ENST00000337432 (RAD51C-001) 58692573-58735611 protein_coding
ENST00000413590 (RAD51C-011) 58695148-58734229 protein_coding
ENST00000421782 (RAD51C-013) 58692628-58695336 protein_coding
ENST00000425173 (RAD51C-006) 58694990-58709876 protein_coding
ENST00000461271 (RAD51C-008) 58692573-58709911 protein_coding
ENST00000461706 (RAD51C-012) 58732332-58734331 retained_intron
ENST00000475762 (RAD51C-002) 58692602-58734331 nonsense_mediated_decay
ENST00000476741 (RAD51C-005) 58692602-58694880 processed_transcript
ENST00000482007 (RAD51C-003) 58692615-58734327 nonsense_mediated_decay
ENST00000486827 (RAD51C-004) 58692606-58695333 nonsense_mediated_decay
ENST00000487525 (RAD51C-007) 58692606-58734325 nonsense_mediated_decay
ENST00000487921 (RAD51C-009) 58692576-58705913 processed_transcript
ENST00000578151 (RAD51C-017) 58709819-58734342 retained_intron
ENST00000581221 (RAD51C-015) 58709639-58734327 retained_intron
ENST00000583539 (RAD51C-018) 58692573-58732766 protein_coding
ENST00000584617 (RAD51C-014) 58692663-58732519 nonsense_mediated_decay
ENST00000584804 (RAD51C-016) 58709859-58734331 protein_coding
ENST00000622327 (RAD51C-019) 58695050-58700253 protein_coding
ENSG00000108395 (TRIM37)
tripartite motif containing 37 		ENST00000262294 (TRIM37-002) 58998202-59106721 protein_coding
ENST00000393065 (TRIM37-003) 58998987-59106826 protein_coding
ENST00000393066 (TRIM37-001) 58982651-59106921 protein_coding
ENST00000577554 (TRIM37-004) 58998200-59106740 nonsense_mediated_decay
ENST00000580122 (TRIM37-010) 59079798-59106459 nonsense_mediated_decay
ENST00000580620 (TRIM37-006) 59087979-59106664 retained_intron
ENST00000580973 (TRIM37-007) 59075684-59106715 nonsense_mediated_decay
ENST00000581468 (TRIM37-008) 59061089-59081162 protein_coding
ENST00000582852 (TRIM37-009) 59064152-59079807 retained_intron
ENST00000583387 (TRIM37-005) 59087980-59106711 retained_intron
ENST00000583945 (TRIM37-011) 58982651-59012407 protein_coding
ENST00000584889 (TRIM37-013) 59088226-59106468 protein_coding
ENST00000585287 (TRIM37-012) 58982638-59015617 protein_coding
ENSG00000175175 (PPM1E)
protein phosphatase, Mg2+/Mn2+ dependent, 1E 		ENST00000308249 (PPM1E-001) 58755869-58985176 protein_coding
ENSG00000241462 (RP11-579O24.1)
 ENST00000471945 (RP11-579O24.1-001) 58897776-58899692 processed_pseudogene
ENSG00000263938 (RP11-579O24.3)
 ENST00000582080 (RP11-579O24.3-001) 58965952-58966727 sense_intronic
ENSG00000274198 (RP11-579A4.1)
 ENST00000621624 (RP11-579A4.1-001) 58747055-58747340 lincRNA
ENSG00000275680 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000613789 (Metazoa_SRP.1-331) 58951185-58951513 misc_RNA
ENSG00000276601 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000616695 (Metazoa_SRP.1-380) 58785323-58785608 misc_RNA

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000566_0001ENSDARG00000026499ENSDART00000063551ENSDARG00000043287ENSDART00000063544ENSDART00000126727ENSDART00000141013ENSDARG00000068919ENSDART00000099841ENSDART00000138460CIL_000566_0002ENSG00000108384ENST00000337432ENST00000413590ENST00000421782ENST00000425173ENST00000461271ENST00000461706ENST00000475762ENST00000476741ENST00000482007ENST00000486827ENST00000487525ENST00000487921ENST00000578151ENST00000581221ENST00000583539ENST00000584617ENST00000584804ENST00000622327ENSG00000108395ENST00000262294ENST00000393065ENST00000393066ENST00000577554ENST00000580122ENST00000580620ENST00000580973ENST00000581468ENST00000582852ENST00000583387ENST00000583945ENST00000584889ENST00000585287ENSG00000175175ENST00000308249ENSG00000241462ENST00000471945ENSG00000263938ENST00000582080ENSG00000274198ENST00000621624ENSG00000275680ENST00000613789ENSG00000276601ENST00000616695
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000566_0001ENSDARG00000026499ENSDART00000063551ENSDARG00000043287ENSDART00000063544ENSDART00000141013ENSDARG00000068919ENSDART00000099841ENSDART00000138460CIL_000566_0002ENSG00000108384ENST00000337432ENST00000413590ENST00000421782ENST00000425173ENST00000461271ENST00000475762ENST00000482007ENST00000486827ENST00000487525ENST00000487921ENST00000581221ENST00000583539ENST00000584617ENST00000584804ENST00000622327ENSG00000108395ENST00000262294ENST00000393065ENST00000393066ENST00000577554ENSG00000175175ENST00000308249ENSG00000241462ENST00000471945ENSG00000263938ENST00000582080ENSG00000274198ENST00000621624ENSG00000275680ENST00000613789ENSG00000276601ENST00000616695
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000026499 ENSDART00000063551 N/A N/A N/A N/A N/A N/A 1.906±0.00 0.029±0.00 0.119±0.00 N/A 1.300±0.00 N/A N/A N/A
ENSDARG00000043287 ENSDART00000063544 N/A N/A N/A 6.485±4.76 N/A N/A 7.033±0.00 2.243±0.00 0.907±0.00 N/A 3.219±0.00 N/A N/A N/A
ENSDART00000126727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000141013 N/A N/A N/A 10.392±6.94 N/A N/A 15.122±7.08 12.761±2.50 1.529±0.00 N/A 5.988±0.00 N/A N/A N/A
ENSDARG00000068919 ENSDART00000099841 N/A N/A N/A 0.753±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000138460 N/A N/A N/A N/A N/A N/A N/A 2.582±1.07 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108384 ENST00000337432 N/A N/A N/A 0.903±0.08 0.667±0.00 0.324±0.00 0.859±0.00 0.734±0.00 0.280±0.00 0.471±0.00 0.387±0.00 0.887±0.00 0.772±0.00 N/A
ENST00000413590 N/A N/A N/A 3.015±0.08 1.449±0.44 N/A 2.437±1.46 N/A N/A N/A N/A 3.233±0.98 5.659±0.00 7.542±1.91
ENST00000421782 2.163±0.00 7.723±0.00 N/A N/A N/A N/A N/A 3.154±0.00 N/A 1.939±0.00 N/A N/A 4.666±0.00 N/A
ENST00000425173 N/A N/A N/A N/A 0.492±0.00 N/A N/A 0.656±0.00 N/A 1.609±0.00 N/A N/A N/A N/A
ENST00000461271 N/A N/A 0.486±0.00 2.574±0.15 N/A 3.050±0.00 N/A N/A 1.643±0.02 N/A N/A 3.134±1.13 N/A 5.059±0.00
ENST00000461706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475762 N/A 1.222±0.00 N/A 0.991±0.04 N/A 0.688±0.00 N/A N/A N/A 0.592±0.08 N/A N/A 1.105±0.00 N/A
ENST00000476741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482007 1.113±0.00 N/A N/A 2.921±0.00 2.204±0.00 3.339±0.00 3.267±0.00 3.430±0.00 1.359±0.00 1.070±0.00 1.244±0.00 4.670±1.85 3.896±1.17 7.477±4.05
ENST00000486827 N/A N/A N/A 1.183±0.00 N/A N/A N/A N/A N/A N/A N/A 0.846±0.00 N/A N/A
ENST00000487525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.304±0.00 3.501±1.03
ENST00000487921 N/A N/A N/A N/A N/A 1.149±0.00 0.812±0.00 N/A N/A N/A 2.118±0.00 N/A N/A N/A
ENST00000578151 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581221 N/A N/A N/A 4.069±0.00 0.807±0.00 N/A 1.576±0.00 2.242±0.00 N/A N/A 1.990±0.00 N/A N/A N/A
ENST00000583539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.737±0.00 N/A N/A
ENST00000584617 2.148±0.00 N/A N/A N/A N/A N/A N/A 2.882±0.00 N/A N/A N/A N/A N/A N/A
ENST00000584804 N/A N/A N/A N/A N/A 2.770±0.00 N/A N/A N/A N/A 2.710±0.00 N/A N/A N/A
ENST00000622327 N/A N/A N/A N/A N/A 1.243±0.00 1.269±0.00 N/A N/A 1.688±0.00 2.349±0.00 N/A N/A N/A
ENSG00000108395 ENST00000262294 2.066±0.00 3.498±0.00 N/A 27.331±4.79 3.647±0.00 3.403±1.04 2.908±1.67 3.330±0.85 1.672±0.00 2.479±0.00 2.020±1.03 5.523±1.08 4.403±2.57 32.572±13.05
ENST00000393065 1.069±0.00 N/A 0.782±0.00 N/A 1.900±0.00 N/A 0.898±0.00 N/A 2.985±0.00 1.532±0.00 0.292±0.00 3.410±0.00 N/A N/A
ENST00000393066 N/A N/A 1.477±0.00 N/A N/A N/A N/A N/A 1.131±0.00 1.316±0.00 N/A N/A N/A 21.781±0.00
ENST00000577554 0.611±0.00 0.792±0.00 N/A N/A N/A N/A N/A N/A 0.553±0.00 1.312±0.00 N/A 0.954±0.00 N/A N/A
ENST00000580122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580973 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582852 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583387 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585287 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000175175 ENST00000308249 N/A N/A N/A 5.983±1.39 N/A N/A N/A 1.010±0.00 0.296±0.00 0.223±0.00 N/A 1.003±0.46 N/A 7.732±3.75
ENSG00000241462 ENST00000471945 N/A N/A N/A 0.191±0.00 N/A N/A 0.036±0.00 N/A N/A 0.035±0.00 N/A 0.265±0.00 N/A 0.769±0.53
ENSG00000263938 ENST00000582080 0.050±0.00 0.035±0.00 N/A 0.216±0.11 0.032±0.00 N/A 0.011±0.00 N/A 0.040±0.00 N/A N/A 0.154±0.13 0.057±0.00 0.144±0.05
ENSG00000274198 ENST00000621624 N/A N/A N/A 0.206±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.258±0.00
ENSG00000275680 ENST00000613789 0.047±0.00 N/A N/A 0.160±0.00 N/A N/A 0.046±0.00 N/A N/A 0.232±0.00 0.044±0.00 N/A N/A N/A
ENSG00000276601 ENST00000616695 N/A 0.252±0.00 N/A 0.133±0.00 N/A 0.038±0.00 0.046±0.00 0.042±0.00 N/A N/A N/A N/A N/A 0.116±0.00

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