C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000482027 RP11-767L7.1-001 ENSG00000239835 9606 + 3:120028740-120029868 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyENST00000482027
Transcript ID Adipose Adrenal Brain Breast Heart Kidney
ENST00000482027 0.023±0.00 0.045±0.00 0.070±0.00 0.011±0.00 0.011±0.00 0.367±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005BP CIL_0005BP_0002 CGP 3:119780484-120094417
CIL_0002U6 CIL_0002U6_0002 CGP 3:119821323-120285094

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000048642 Parl-001 protein_coding Mus_musculus 0 924
ENSMUST00000136252 Parl-002 nonsense_mediated_decay Mus_musculus 0 573
ENSMUST00000120117 Gm13181-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000121419 Gm15006-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000117482 Gm14994-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000126001 Parl-008 retained_intron Mus_musculus 0 270
ENSMUST00000155832 Parl-007 retained_intron Mus_musculus 0 268
ENSMUST00000123070 Parl-003 retained_intron Mus_musculus 0 237
ENSMUST00000117135 Gm14995-001 processed_pseudogene Mus_musculus 1.96182e-44 183

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