C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: structural maintenance of chromosomes 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000486711 SMC4-025 ENSG00000113810 9606 + 3:160430929-160432443 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENST00000486711
Transcript ID Ovary Placenta Testis
ENST00000486711 48.760±0.00 22.184±0.00 93.836±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JR CIL_0004JR_0002 CGP 3:160256986-160434962
CIL_0004JQ CIL_0004JQ_0002 CGP 3:160399274-160485773

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000148385 Smc4-002 nonsense_mediated_decay Mus_musculus 0 632
ENSMUST00000107803 Smc4-004 protein_coding Mus_musculus 0 632
ENSMUST00000042901 Smc4-001 protein_coding Mus_musculus 0 632
ENSMUST00000128118 Smc4-009 retained_intron Mus_musculus 0 442

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