C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: structural maintenance of chromosomes 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107803 Smc4-004 ENSMUSG00000034349 10090 + 3:69004991-69034618 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonLiverLungMuscleOvaryPlacentaTestisENSMUST00000107803
Transcript ID Adrenal Bladder Brain Colon Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107803 7.135±1.83 1.044±0.16 1.382±0.25 2.332±0.19 3.172±4.58 0.980±0.00 0.327±0.13 12.213±12.13 25.767±31.97 58.924±77.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JR CIL_0004JR_0003 CGP 3:68892499-69034623
CIL_0004JQ CIL_0004JQ_0003 CGP 3:69004738-69044755

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0010032 IMP meiotic chromosome condensation
GO:0045132 IMP meiotic chromosome segregation
GO:0051383 IMP kinetochore organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344722 SMC4-007 protein_coding Homo_sapiens 0 4385
ENST00000357388 SMC4-001 protein_coding Homo_sapiens 0 4385
ENST00000462668 SMC4-008 retained_intron Homo_sapiens 0 3217
ENST00000462787 SMC4-006 protein_coding Homo_sapiens 0 3249
ENST00000465563 SMC4-019 retained_intron Homo_sapiens 0 741
ENST00000465903 SMC4-010 protein_coding Homo_sapiens 0 433
ENST00000467263 SMC4-021 retained_intron Homo_sapiens 0 255
ENST00000467468 SMC4-014 protein_coding Homo_sapiens 0 715
ENST00000468653 SMC4-002 retained_intron Homo_sapiens 0 1024
ENST00000469762 SMC4-003 protein_coding Homo_sapiens 0 4494
ENST00000469858 SMC4-004 nonsense_mediated_decay Homo_sapiens 0 2065
ENST00000470240 SMC4-017 processed_transcript Homo_sapiens 0 575
ENST00000472282 SMC4-013 processed_transcript Homo_sapiens 0 531
ENST00000472991 SMC4-012 protein_coding Homo_sapiens 0 665
ENST00000484799 SMC4-027 retained_intron Homo_sapiens 0 483
ENST00000485645 SMC4-011 protein_coding Homo_sapiens 0 444
ENST00000485867 SMC4-016 protein_coding Homo_sapiens 0 643
ENST00000486711 SMC4-025 retained_intron Homo_sapiens 0 632
ENST00000487747 SMC4-026 processed_transcript Homo_sapiens 0 640
ENST00000488017 SMC4-024 retained_intron Homo_sapiens 0 298
ENST00000489573 SMC4-005 protein_coding Homo_sapiens 0 1376
ENST00000490207 SMC4-015 protein_coding Homo_sapiens 0 473
ENST00000493695 SMC4-022 retained_intron Homo_sapiens 0 302
ENST00000494612 SMC4-020 processed_transcript Homo_sapiens 0 226
ENST00000497203 SMC4-023 retained_intron Homo_sapiens 0 394
ENST00000497311 SMC4-009 protein_coding Homo_sapiens 0 444
ENST00000497984 SMC4-018 processed_transcript Homo_sapiens 0 606
ENST00000543469 TRIM59-201 protein_coding Homo_sapiens 1.00053e-42 180

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