C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L36a pseudogene 51
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000487216 RPL36AP51-001 ENSG00000242291 9606 + 19:21233335-21233652 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLungOvaryPlacentaTestisENST00000487216
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Lung Ovary Placenta Testis
ENST00000487216 0.087±0.00 0.182±0.00 0.046±0.00 0.136±0.00 0.042±0.00 0.135±0.00 0.043±0.00 0.161±0.00 0.218±0.00 0.040±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020L CIL_00020L_0001 CGP 19:21221500-21379302

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113211 Rpl36a-001 protein_coding Mus_musculus 0 390
ENSMUST00000172023 Rpl36a-003 retained_intron Mus_musculus 0 387
ENSMUST00000170828 Rpl36a-004 nonsense_mediated_decay Mus_musculus 0 385
ENSMUST00000149857 Rpl36a-005 retained_intron Mus_musculus 0 381
ENSMUST00000081987 Rpl36a-ps1-201 processed_pseudogene Mus_musculus 0 374
ENSMUST00000116105 Gm11970-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000142299 Gm13194-001 processed_pseudogene Mus_musculus 0 313
ENSMUST00000174479 Dtnb-005 protein_coding Mus_musculus 0 309
ENSMUST00000121439 Gm12936-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000169457 Rpl36a-006 retained_intron Mus_musculus 0 202
ENSMUST00000152266 Rpl36a-002 retained_intron Mus_musculus 7.00649e-45 183

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