C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PIP5K1A and PSMD4-like, pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000489875 PIPSL-001 ENSG00000180764 9606 - 10:93958808-93961540 transcribed_processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000489875
Transcript ID Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000489875 0.029±0.00 0.196±0.00 0.282±0.00 0.033±0.02 0.104±0.01 0.095±0.00 0.019±0.00 0.060±0.01 0.195±0.09 8.829±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00067K CIL_00067K_0001 CGP 10:93893973-94332823

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107233 Pip5k1a-001 protein_coding Mus_musculus 0 1640
ENSMUST00000107236 Pip5k1a-002 protein_coding Mus_musculus 0 1637
ENSMUST00000005768 Pip5k1a-004 protein_coding Mus_musculus 0 1629
ENSMUST00000107232 Pip5k1a-009 protein_coding Mus_musculus 0 1343
ENSMUST00000107237 Psmd4-002 protein_coding Mus_musculus 0 1336
ENSMUST00000071664 Psmd4-001 protein_coding Mus_musculus 0 1295
ENSMUST00000117355 Psmd4-004 protein_coding Mus_musculus 0 1086
ENSMUST00000136868 Psmd4-005 retained_intron Mus_musculus 0 1018
ENSMUST00000140348 Psmd4-008 protein_coding Mus_musculus 0 501
ENSMUST00000107231 Pip5k1a-007 processed_transcript Mus_musculus 0 488
ENSMUST00000140280 Psmd4-003 retained_intron Mus_musculus 0 484
ENSMUST00000045469 Pip5k1c-006 protein_coding Mus_musculus 0 448
ENSMUST00000161854 Pip5k1c-004 nonsense_mediated_decay Mus_musculus 0 448
ENSMUST00000105327 Pip5k1c-001 protein_coding Mus_musculus 0 448
ENSMUST00000163075 Pip5k1c-003 protein_coding Mus_musculus 0 448
ENSMUST00000160291 Pip5k1c-010 nonsense_mediated_decay Mus_musculus 0 355
ENSMUST00000147960 Psmd4-006 retained_intron Mus_musculus 0 217
ENSMUST00000143688 Psmd4-007 processed_transcript Mus_musculus 0 206
ENSDART00000065032 pip5k1ba-001 protein_coding Danio_rerio 0 200
ENSMUST00000107229 Pip5k1a-005 processed_transcript Mus_musculus 0.0000000000002 82
ENSMUST00000112673 Pip5k1b-002 protein_coding Mus_musculus 0.00000002 66
ENSMUST00000025800 Pip5k1b-001 protein_coding Mus_musculus 0.00000002 66

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