C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L39 pseudogene 36
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000490784 RPL39P36-001 ENSG00000239912 9606 + 19:53413190-53413345 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonKidneyLungOvaryTestisENST00000490784
Transcript ID Adrenal Bladder Brain Breast Colon Kidney Lung Ovary Testis
ENST00000490784 0.645±0.00 3.302±0.00 0.216±0.00 0.412±0.00 0.295±0.00 0.529±0.00 0.471±0.00 11.031±10.33 0.585±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055X CIL_00055X_0002 CGP 19:53333749-53430413

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121292 Rpl39l-002 protein_coding Mus_musculus 5.00264e-43 176
ENSMUST00000044103 Rpl39l-001 protein_coding Mus_musculus 5.00264e-43 176
ENSMUST00000115231 Rpl39-001 protein_coding Mus_musculus 1e-38 161
ENSMUST00000142604 Rpl39-ps-002 processed_transcript Mus_musculus 6e-37 156
ENSMUST00000117602 Gm15148-001 processed_pseudogene Mus_musculus 8e-36 152
ENSMUST00000146505 Rpl39-ps-001 transcribed_processed_pseudogene Mus_musculus 3e-35 150
ENSMUST00000121971 Gm12013-001 processed_pseudogene Mus_musculus 1e-34 148
ENSMUST00000191066 RP23-127L14.1-001 processed_pseudogene Mus_musculus 2e-32 141
ENSMUST00000118985 Gm14541-001 processed_pseudogene Mus_musculus 6e-32 139
ENSMUST00000118637 Gm11694-001 processed_pseudogene Mus_musculus 4e-29 130
ENSMUST00000119534 Gm15067-001 processed_pseudogene Mus_musculus 1e-28 128
ENSMUST00000138799 Rpl39-002 retained_intron Mus_musculus 2e-26 121

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