C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: prenyl (decaprenyl) diphosphate synthase, subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000491711 PDSS1-002 ENSG00000148459 9606 + 10:26720343-26746541 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENST00000491711
Transcript ID Muscle
ENST00000491711 2.146±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000R4 CIL_0000R4_0001 CGP 10:26438203-26746798
CIL_0000R7 CIL_0000R7_0001 CGP 10:26697659-26861087

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008299 IEA isoprenoid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053729 Pdss1-001 protein_coding Mus_musculus 0 592
ENSMUST00000152170 Pdss1-002 protein_coding Mus_musculus 0 363
ENSMUST00000139472 Pdss1-003 retained_intron Mus_musculus 0 357
ENSMUST00000149229 Pdss1-007 nonsense_mediated_decay Mus_musculus 0 243

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