C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Fas (TNFRSF6) associated factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000494400 FAF1-002 ENSG00000185104 9606 - 1:50441276-50706051 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000494400
Transcript ID Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000494400 2.005±0.00 2.906±0.00 1.489±0.32 2.632±0.00 1.361±0.00 2.023±0.00 2.601±0.98 2.283±0.00 3.702±0.31 4.621±0.44 19.112±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008K0 CIL_0008K0_0001 VISTA 1:50240418-50841642
CIL_0008UT CIL_0008UT_0001 VISTA 1:50268874-50870617
CIL_0008US CIL_0008US_0001 VISTA 1:50333169-50934241
CIL_0009AC CIL_0009AC_0001 VISTA 1:50399523-51001114
CIL_00063F CIL_00063F_0002 CGP 1:50417550-50960263
CIL_0006WA CIL_0006WA_0002 CGP 1:50439478-50974633

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102724 Faf1-001 protein_coding Mus_musculus 0 1930
ENSMUST00000155204 Faf1-003 processed_transcript Mus_musculus 0 941

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