C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008US_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs197 VISTA 9606 1:50333169-50934241
GeneTranscriptPositionBiotype
ENSG00000142700 (DMRTA2)
DMRT-like family A2 		ENST00000404795 (DMRTA2-002) 50417550-50423500 protein_coding
ENST00000418121 (DMRTA2-001) 50417550-50421632 protein_coding
ENSG00000185104 (FAF1)
Fas (TNFRSF6) associated factor 1 		ENST00000371778 (FAF1-201) 50441276-50959793 protein_coding
ENST00000396153 (FAF1-001) 50439478-50960263 protein_coding
ENST00000472808 (FAF1-005) 50539592-50606944 processed_transcript
ENST00000487898 (FAF1-004) 50705784-50959738 processed_transcript
ENST00000494400 (FAF1-002) 50441276-50706051 nonsense_mediated_decay
ENSG00000225671 (FCF1P6)
FCF1 pseudogene 6 		ENST00000456841 (FCF1P6-001) 50405430-50406024 processed_pseudogene
ENSG00000225767 (RP5-850O15.3)
 ENST00000424664 (RP5-850O15.3-001) 50461469-50471150 antisense
ENSG00000229316 (HMGB1P45)
high mobility group box 1 pseudogene 45 		ENST00000435986 (HMGB1P45-001) 50398825-50399773 processed_pseudogene
ENSG00000230585 (PHBP12)
prohibitin pseudogene 12 		ENST00000453979 (PHBP12-001) 50780340-50781150 processed_pseudogene
ENSG00000237130 (MRPS6P2)
mitochondrial ribosomal protein S6 pseudogene 2 		ENST00000381143 (MRPS6P2-001) 50846468-50846837 processed_pseudogene
ENSG00000271782 (RP5-850O15.4)
 ENST00000607815 (RP5-850O15.4-001) 50437028-50437306 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0008US_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs197 VISTA 10090 4:109505979-110107022
GeneTranscriptPositionBiotype
ENSMUSG00000010517 (Faf1)
Fas-associated factor 1 		ENSMUST00000102724 (Faf1-001) 109676588-109963960 protein_coding
ENSMUST00000143217 (Faf1-002) 109676997-109683345 processed_transcript
ENSMUST00000155204 (Faf1-003) 109840785-109925378 processed_transcript
ENSMUSG00000028551 (Cdkn2c)
cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) 		ENSMUST00000063531 (Cdkn2c-002) 109660876-109665372 protein_coding
ENSMUST00000097921 (Cdkn2c-001) 109660876-109667189 protein_coding
ENSMUSG00000047143 (Dmrta2)
doublesex and mab-3 related transcription factor like family A2 		ENSMUST00000061187 (Dmrta2-001) 109978053-109983687 protein_coding
ENSMUSG00000060491 (4930522H14Rik)
RIKEN cDNA 4930522H14 gene 		ENSMUST00000082306 (4930522H14Rik-001) 109505365-109531204 protein_coding
ENSMUST00000102725 (4930522H14Rik-002) 109505337-109531297 protein_coding
ENSMUSG00000082771 (Gm12803)
predicted gene 12803 		ENSMUST00000118907 (Gm12803-001) 109629582-109630725 processed_pseudogene
ENSMUSG00000083995 (Gm12808)
predicted gene 12808 		ENSMUST00000120597 (Gm12808-001) 109754414-109754817 processed_pseudogene
ENSMUSG00000085256 (Dmrta2os)
doublesex and mab-3 related transcription factor like family A2, opposite strand 		ENSMUST00000124754 (Dmrta2os-001) 109976747-109977491 antisense
ENSMUST00000141893 (Dmrta2os-002) 109976738-109977813 antisense
ENSMUSG00000087641 (Gm12811)
predicted gene 12811 		ENSMUST00000125237 (Gm12811-001) 109569214-109656791 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008US_0001ENSG00000142700ENST00000404795ENST00000418121ENSG00000185104ENST00000371778ENST00000396153ENST00000472808ENST00000487898ENST00000494400ENSG00000225671ENST00000456841ENSG00000225767ENST00000424664ENSG00000229316ENST00000435986ENSG00000230585ENST00000453979ENSG00000237130ENST00000381143ENSG00000271782ENST00000607815CIL_0008US_0002ENSMUSG00000010517ENSMUST00000102724ENSMUST00000143217ENSMUST00000155204ENSMUSG00000028551ENSMUST00000063531ENSMUST00000097921ENSMUSG00000047143ENSMUST00000061187ENSMUSG00000060491ENSMUST00000082306ENSMUST00000102725ENSMUSG00000082771ENSMUST00000118907ENSMUSG00000083995ENSMUST00000120597ENSMUSG00000085256ENSMUST00000124754ENSMUST00000141893ENSMUSG00000087641ENSMUST00000125237
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008US_0001ENSG00000142700ENST00000404795ENST00000418121ENSG00000185104ENST00000371778ENST00000396153ENST00000472808ENST00000487898ENST00000494400ENSG00000225671ENST00000456841ENSG00000225767ENST00000424664ENSG00000229316ENST00000435986ENSG00000230585ENST00000453979ENSG00000237130ENST00000381143ENSG00000271782ENST00000607815CIL_0008US_0002ENSMUSG00000010517ENSMUST00000102724ENSMUST00000155204ENSMUSG00000028551ENSMUST00000063531ENSMUST00000097921ENSMUSG00000047143ENSMUST00000061187ENSMUSG00000060491ENSMUST00000082306ENSMUST00000102725ENSMUSG00000082771ENSMUST00000118907ENSMUSG00000083995ENSMUST00000120597ENSMUSG00000085256ENSMUST00000124754ENSMUST00000141893ENSMUSG00000087641ENSMUST00000125237
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000142700 ENST00000404795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.008±0.00 N/A 1.289±0.00
ENST00000418121 N/A N/A N/A 0.129±0.04 0.010±0.00 N/A N/A N/A N/A 0.069±0.00 0.009±0.00 0.077±0.03 N/A 0.557±0.00
ENSG00000185104 ENST00000371778 3.517±0.00 7.426±0.00 N/A 6.989±3.45 9.069±0.00 11.030±0.00 10.999±0.00 6.410±4.92 4.254±0.00 6.436±0.00 39.766±0.00 10.295±2.17 9.270±4.96 43.550±25.21
ENST00000396153 1.342±0.00 1.820±0.00 N/A 2.479±0.10 2.644±0.10 2.002±0.47 4.105±2.35 2.059±0.00 2.225±1.36 1.355±0.52 7.827±6.12 2.304±1.15 1.830±0.57 5.921±0.00
ENST00000472808 N/A N/A 3.015±0.00 9.736±0.00 4.614±0.00 5.937±0.00 2.722±0.00 2.719±0.00 N/A 3.711±0.00 4.225±0.00 N/A N/A N/A
ENST00000487898 N/A N/A N/A 6.805±0.00 8.059±0.00 9.591±0.00 6.171±0.00 4.337±0.00 11.201±0.00 11.339±0.00 8.129±0.00 7.448±0.00 N/A N/A
ENST00000494400 N/A 2.005±0.00 N/A 2.906±0.00 1.489±0.32 2.632±0.00 1.361±0.00 2.023±0.00 N/A 2.601±0.98 2.283±0.00 3.702±0.31 4.621±0.44 19.112±0.00
ENSG00000225671 ENST00000456841 N/A 0.018±0.00 N/A N/A N/A 0.016±0.00 N/A N/A N/A N/A N/A N/A N/A 0.133±0.00
ENSG00000225767 ENST00000424664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.051±0.00 1.548±0.01
ENSG00000229316 ENST00000435986 N/A N/A N/A N/A 0.019±0.00 N/A N/A N/A N/A 0.351±0.00 N/A N/A N/A 0.087±0.00
ENSG00000230585 ENST00000453979 0.054±0.00 0.058±0.00 N/A 0.254±0.00 0.126±0.11 0.544±0.44 0.187±0.15 0.618±0.56 0.485±0.00 0.664±0.58 0.472±0.33 0.048±0.00 0.117±0.00 0.064±0.02
ENSG00000237130 ENST00000381143 N/A N/A N/A N/A 1.075±0.00 1.133±0.00 0.575±0.00 N/A 1.382±0.00 N/A N/A N/A N/A N/A
ENSG00000271782 ENST00000607815 0.135±0.00 0.997±0.00 N/A 4.869±3.67 1.295±1.01 0.651±0.00 0.823±0.00 1.560±0.00 0.592±0.48 0.241±0.00 0.743±0.00 0.552±0.20 0.285±0.11 0.329±0.15
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000010517 ENSMUST00000102724 6.592±0.33 6.661±3.27 2.817±0.58 6.988±2.82 7.047±2.58 9.296±3.76 5.574±0.40 5.124±1.67 3.296±1.06 6.087±1.20 9.342±3.53 10.975±3.54 10.351±6.46 7.216±2.45
ENSMUST00000143217 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155204 N/A N/A N/A 1.765±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 5.324±0.00 5.094±0.00
ENSMUSG00000028551 ENSMUST00000063531 31.783±16.56 N/A 5.408±0.40 0.447±0.10 22.469±9.97 N/A 2.415±0.30 5.154±0.76 1.248±0.44 5.224±1.97 4.630±0.52 16.915±9.03 1.005±0.69 N/A
ENSMUST00000097921 17.437±8.38 9.271±3.17 2.373±0.41 2.375±1.93 9.967±2.73 4.089±1.11 1.497±0.30 1.621±0.28 5.857±5.66 2.611±0.42 1.894±0.23 5.984±1.89 2.455±1.48 32.762±3.01
ENSMUSG00000047143 ENSMUST00000061187 0.123±0.03 0.296±0.08 0.130±0.03 4.533±4.50 0.075±0.03 0.235±0.06 0.022±0.01 0.089±0.03 0.028±0.02 0.177±0.04 0.021±0.01 0.344±0.27 0.575±0.42 1.244±0.56
ENSMUSG00000060491 ENSMUST00000082306 N/A N/A N/A N/A N/A N/A 0.048±0.00 0.060±0.00 N/A N/A N/A N/A N/A 9.191±2.58
ENSMUST00000102725 N/A N/A N/A N/A N/A N/A N/A 0.057±0.00 N/A N/A N/A 0.030±0.01 N/A 2.427±0.23
ENSMUSG00000082771 ENSMUST00000118907 N/A 0.379±0.00 0.010±0.00 N/A 0.257±0.08 N/A 0.117±0.05 0.128±0.00 0.160±0.15 N/A 0.042±0.02 0.056±0.01 0.021±0.00 N/A
ENSMUSG00000083995 ENSMUST00000120597 N/A N/A 0.130±0.10 0.132±0.00 0.629±0.00 N/A 0.122±0.00 0.231±0.10 0.052±0.02 0.621±0.00 N/A N/A N/A N/A
ENSMUSG00000085256 ENSMUST00000124754 0.086±0.00 0.186±0.00 N/A 4.845±0.00 0.181±0.03 N/A 0.149±0.00 0.036±0.00 0.050±0.00 N/A 0.085±0.00 0.231±0.07 0.317±0.20 1.076±0.08
ENSMUST00000141893 N/A 0.220±0.04 0.033±0.01 2.200±0.00 0.061±0.00 0.088±0.02 N/A 0.068±0.03 0.073±0.03 0.135±0.07 0.138±0.00 0.281±0.08 0.448±0.25 0.433±0.26
ENSMUSG00000087641 ENSMUST00000125237 N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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