C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | collagen, type XXVII, alpha 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000494780  |
COL27A1-007 |
ENSG00000196739 |
9606 | + |
9:114300362-114301542  |
processed_transcript |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008AD | CIL_0008AD_0001 | VISTA | 9:113664156-114265533 |
| CIL_0004P5 | CIL_0004P5_0001 | CGP | 9:114086126-114312511 |
| CIL_0004P4 | CIL_0004P4_0001 | CGP | 9:114155560-114326475 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| No GO terms available. | ||
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000149856
|
Col27a1-006 | retained_intron | Mus_musculus | 0 | 213 |
|
ENSMUST00000183913
|
Col27a1-007 | nonsense_mediated_decay | Mus_musculus | 0 | 213 |
|
ENSMUST00000036300
|
Col27a1-001 | protein_coding | Mus_musculus | 0 | 213 |
|
ENSMUST00000184067
|
Col27a1-004 | nonsense_mediated_decay | Mus_musculus | 3e-20 | 102 |
