C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XXVII, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196739 COL27A1 9606 + 9:114155560-114312511 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000356083 COL27A1-001 114155560-114312511 protein_coding
  ENST00000451716 COL27A1-004 114167715-114218579 protein_coding
  ENST00000468565 COL27A1-003 114307032-114311528 processed_transcript
  ENST00000477421 COL27A1-006 114268807-114274230 processed_transcript
  ENST00000485397 COL27A1-005 114240220-114246121 retained_intron
  ENST00000490831 COL27A1-008 114306213-114309339 processed_transcript
  ENST00000494090 COL27A1-002 114168608-114311548 nonsense_mediated_decay
  ENST00000494780 COL27A1-007 114300362-114301542 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356083ENST00000451716ENST00000468565ENST00000494090
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356083 3.842±0.00 1.449±0.00 0.176±0.14 0.413±0.00 1.156±0.00 0.724±0.00 1.516±0.93 0.638±0.00 0.651±0.55 N/A 4.959±2.07 3.658±1.07 0.605±0.00
ENST00000451716 N/A 1.176±0.00 N/A 0.339±0.00 0.544±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468565 N/A N/A 0.049±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494090 3.434±0.00 N/A 0.106±0.00 0.335±0.10 0.206±0.00 N/A 0.913±0.00 N/A N/A 0.059±0.00 1.809±0.41 1.395±0.15 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AD CIL_0008AD_0001 VISTA 9:113664156-114265533
CIL_0004P5 CIL_0004P5_0001 CGP 9:114086126-114312511
CIL_0004P4 CIL_0004P4_0001 CGP 9:114155560-114326475

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003431 IEA growth plate cartilage chondrocyte development
GO:0005201 IEA extracellular matrix structural constituent
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005583 IEA fibrillar collagen trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0030198 TAS extracellular matrix organization
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000028236 col27a1b collagen, type XXVII, alpha 1b protein_coding Danio_rerio
ENSDARG00000034373 col27a1a collagen, type XXVII, alpha 1a protein_coding Danio_rerio
ENSMUSG00000045672 Col27a1 collagen, type XXVII, alpha 1 protein_coding Mus_musculus

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