| Transcript ID | Brain | Ovary | Placenta |
|---|---|---|---|
| ENSMUST00000184067 | 1.636±0.00 | 3.142±0.00 | 0.575±0.28 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | collagen, type XXVII, alpha 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000184067  |
Col27a1-004 |
ENSMUSG00000045672 |
10090 | + |
4:63234286-63333713  |
nonsense_mediated_decay |
Expression Patterns
|
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008AD | CIL_0008AD_0002 | VISTA | 4:62756998-63358386 |
| CIL_0004P5 | CIL_0004P5_0002 | CGP | 4:63165634-63334991 |
| CIL_0004P4 | CIL_0004P4_0002 | CGP | 4:63214004-63348163 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003431 | IMP | growth plate cartilage chondrocyte development |
| GO:0005201 | IDA | extracellular matrix structural constituent |
| GO:0005583 | IDA | fibrillar collagen trimer |
| GO:0030198 | IMP | extracellular matrix organization |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSDART00000137363
|
col27a1b-001 | protein_coding | Danio_rerio | 3.99931e-42 | 178 |
|
ENSDART00000097297
|
col27a1b-201 | protein_coding | Danio_rerio | 1.99993e-41 | 176 |
|
ENST00000356083
|
COL27A1-001 | protein_coding | Homo_sapiens | 0 | 3068 |
|
ENST00000468565
|
COL27A1-003 | processed_transcript | Homo_sapiens | 0 | 660 |
|
ENST00000485397
|
COL27A1-005 | retained_intron | Homo_sapiens | 0 | 329 |
|
ENST00000490831
|
COL27A1-008 | processed_transcript | Homo_sapiens | 0 | 459 |
|
ENST00000494090
|
COL27A1-002 | nonsense_mediated_decay | Homo_sapiens | 0 | 2861 |
|
ENST00000494780
|
COL27A1-007 | processed_transcript | Homo_sapiens | 3e-20 | 102 |
