C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XXVII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000183913 Col27a1-007 ENSMUSG00000045672 10090 + 4:63282667-63333720 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000183913
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000183913 1.570±0.15 2.340±0.34 1.443±0.00 0.616±0.00 2.108±0.25 2.869±0.52 0.357±0.00 3.225±0.87 1.187±0.32 1.211±0.00 0.171±0.04 4.132±0.60 0.784±0.00 4.504±2.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AD CIL_0008AD_0002 VISTA 4:62756998-63358386
CIL_0004P5 CIL_0004P5_0002 CGP 4:63165634-63334991
CIL_0004P4 CIL_0004P4_0002 CGP 4:63214004-63348163

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003431 IMP growth plate cartilage chondrocyte development
GO:0005201 IDA extracellular matrix structural constituent
GO:0005583 IDA fibrillar collagen trimer
GO:0030198 IMP extracellular matrix organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356083 COL27A1-001 protein_coding Homo_sapiens 0 1688
ENST00000468565 COL27A1-003 processed_transcript Homo_sapiens 0 660
ENST00000490831 COL27A1-008 processed_transcript Homo_sapiens 0 459
ENST00000494090 COL27A1-002 nonsense_mediated_decay Homo_sapiens 0 1688
ENST00000494780 COL27A1-007 processed_transcript Homo_sapiens 0 213

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