C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XXVII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036300 Col27a1-001 ENSMUSG00000045672 10090 + 4:63215435-63334991 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036300
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036300 1.020±0.62 1.645±0.19 1.361±0.00 0.417±0.16 1.210±0.52 2.038±0.69 0.414±0.24 4.480±2.31 1.246±0.72 1.646±0.80 0.332±0.05 3.266±1.33 1.142±0.20 0.979±0.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AD CIL_0008AD_0002 VISTA 4:62756998-63358386
CIL_0004P5 CIL_0004P5_0002 CGP 4:63165634-63334991
CIL_0004P4 CIL_0004P4_0002 CGP 4:63214004-63348163

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003431 IMP growth plate cartilage chondrocyte development
GO:0005201 IDA extracellular matrix structural constituent
GO:0005583 IDA fibrillar collagen trimer
GO:0030198 IMP extracellular matrix organization
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000097297 col27a1b-201 protein_coding Danio_rerio 1.99965e-42 180
ENSDART00000137363 col27a1b-001 protein_coding Danio_rerio 8.00001e-42 178
ENST00000356083 COL27A1-001 protein_coding Homo_sapiens 0 4359
ENST00000451716 COL27A1-004 protein_coding Homo_sapiens 0 231
ENST00000468565 COL27A1-003 processed_transcript Homo_sapiens 0 701
ENST00000485397 COL27A1-005 retained_intron Homo_sapiens 0 329
ENST00000490831 COL27A1-008 processed_transcript Homo_sapiens 0 459
ENST00000494090 COL27A1-002 nonsense_mediated_decay Homo_sapiens 0 3976
ENST00000494780 COL27A1-007 processed_transcript Homo_sapiens 0 213

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