C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: aprataxin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000495360 APTX-008 ENSG00000137074 9606 - 9:32973407-33025112 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonENST00000495360
Transcript ID Brain Colon
ENST00000495360 0.919±0.00 1.809±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000655 CIL_000655_0001 CGP 9:32783499-33025168
CIL_00061D CIL_00061D_0001 CGP 9:32972606-33039907

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000012 IDA single strand break repair
GO:0000738 IEA DNA catabolic process, exonucleolytic
GO:0000785 IDA chromatin
GO:0000790 IDA nuclear chromatin
GO:0003682 IDA chromatin binding
GO:0003684 IDA damaged DNA binding
GO:0003690 IDA double-stranded DNA binding
GO:0003725 IDA double-stranded RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0006302 IDA double-strand break repair
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0008219 IEA cell death
GO:0008967 IDA phosphoglycolate phosphatase activity
GO:0016311 IDA dephosphorylation
GO:0031647 IMP regulation of protein stability
GO:0033699 IDA DNA 5'-adenosine monophosphate hydrolase activity
GO:0042542 IDA response to hydrogen peroxide
GO:0046403 IDA polynucleotide 3'-phosphatase activity
GO:0046872 IEA metal ion binding
GO:0047485 IPI protein N-terminus binding
GO:0051219 IPI phosphoprotein binding
GO:0098506 IDA polynucleotide 3' dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000068125 Aptx-004 protein_coding Mus_musculus 0 778
ENSMUST00000129021 Aptx-002 nonsense_mediated_decay Mus_musculus 0 778
ENSMUST00000030119 Aptx-001 protein_coding Mus_musculus 0 778
ENSMUST00000108103 Aptx-003 protein_coding Mus_musculus 0 697
ENSMUST00000128810 Aptx-006 processed_transcript Mus_musculus 0 344
ENSMUST00000155710 Aptx-005 nonsense_mediated_decay Mus_musculus 0 255

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