C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: aprataxin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000068125 Aptx-004 ENSMUSG00000028411 10090 - 4:40682382-40702914 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverOvaryPlacentaENSMUST00000068125
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Ovary Placenta
ENSMUST00000068125 0.406±0.10 0.527±0.07 0.385±0.00 0.956±0.22 0.371±0.09 0.245±0.00 0.617±0.26 0.330±0.15 0.920±0.56 0.688±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000655 CIL_000655_0002 CGP 4:40472180-40703194
CIL_00061D CIL_00061D_0002 CGP 4:40682382-40737149

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000012 IMP single strand break repair
GO:0000738 IEA DNA catabolic process, exonucleolytic
GO:0000785 IEA chromatin
GO:0000790 IEA nuclear chromatin
GO:0003682 IEA chromatin binding
GO:0003684 IEA damaged DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0003725 IEA double-stranded RNA binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IEA nucleolus
GO:0006266 IDA DNA ligation
GO:0006302 IEA double-strand break repair
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0008967 IEA phosphoglycolate phosphatase activity
GO:0016311 IEA dephosphorylation
GO:0031647 IEA regulation of protein stability
GO:0033699 IMP DNA 5'-adenosine monophosphate hydrolase activity
GO:0042542 IEA response to hydrogen peroxide
GO:0046403 IEA polynucleotide 3'-phosphatase activity
GO:0046872 TAS metal ion binding
GO:0047485 IEA protein N-terminus binding
GO:0051219 IEA phosphoprotein binding
GO:0098506 IEA polynucleotide 3' dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309615 APTX-201 protein_coding Homo_sapiens 0 778
ENST00000379812 APTX-030 protein_coding Homo_sapiens 0 388
ENST00000379813 APTX-202 protein_coding Homo_sapiens 0 608
ENST00000379817 APTX-011 protein_coding Homo_sapiens 0 1166
ENST00000379819 APTX-003 protein_coding Homo_sapiens 0 1166
ENST00000379825 APTX-002 protein_coding Homo_sapiens 0 1024
ENST00000397172 APTX-021 protein_coding Homo_sapiens 0 695
ENST00000436040 APTX-203 protein_coding Homo_sapiens 0 1166
ENST00000460940 APTX-016 nonsense_mediated_decay Homo_sapiens 0 529
ENST00000460945 APTX-022 processed_transcript Homo_sapiens 0 265
ENST00000463596 APTX-007 protein_coding Homo_sapiens 0 1166
ENST00000464632 APTX-018 nonsense_mediated_decay Homo_sapiens 0 436
ENST00000465003 APTX-001 nonsense_mediated_decay Homo_sapiens 0 778
ENST00000467331 APTX-012 nonsense_mediated_decay Homo_sapiens 0 1133
ENST00000468275 APTX-017 protein_coding Homo_sapiens 0 1166
ENST00000472896 APTX-013 nonsense_mediated_decay Homo_sapiens 0 311
ENST00000473221 APTX-025 protein_coding Homo_sapiens 0 472
ENST00000474658 APTX-028 nonsense_mediated_decay Homo_sapiens 0 699
ENST00000476858 APTX-006 protein_coding Homo_sapiens 0 778
ENST00000477119 APTX-026 protein_coding Homo_sapiens 0 294
ENST00000478279 APTX-019 nonsense_mediated_decay Homo_sapiens 0 436
ENST00000479656 APTX-004 nonsense_mediated_decay Homo_sapiens 0 1133
ENST00000480031 APTX-027 nonsense_mediated_decay Homo_sapiens 0 496
ENST00000482687 APTX-015 nonsense_mediated_decay Homo_sapiens 0 562
ENST00000483148 APTX-014 nonsense_mediated_decay Homo_sapiens 0 311
ENST00000485479 APTX-010 nonsense_mediated_decay Homo_sapiens 0 778
ENST00000486724 APTX-032 processed_transcript Homo_sapiens 0 510
ENST00000494649 APTX-009 nonsense_mediated_decay Homo_sapiens 0 1133
ENST00000494973 APTX-029 retained_intron Homo_sapiens 0 230
ENST00000495360 APTX-008 nonsense_mediated_decay Homo_sapiens 0 778
ENST00000496030 APTX-031 retained_intron Homo_sapiens 0 283

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