C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000655_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000188133-ENSG00000137074 CGP 9606 9:32783499-33025168
GeneTranscriptPositionBiotype
ENSG00000137074 (APTX)
aprataxin 		ENST00000309615 (APTX-201) 32972607-33001612 protein_coding
ENST00000379812 (APTX-030) 32984631-33001607 protein_coding
ENST00000379813 (APTX-202) 32973396-33001612 protein_coding
ENST00000379817 (APTX-011) 32972618-32990088 protein_coding
ENST00000379819 (APTX-003) 32972749-33001604 protein_coding
ENST00000379825 (APTX-002) 32972606-33001628 protein_coding
ENST00000397172 (APTX-021) 32972616-33001607 protein_coding
ENST00000436040 (APTX-203) 32972607-33001576 protein_coding
ENST00000460940 (APTX-016) 32972618-32990088 nonsense_mediated_decay
ENST00000460945 (APTX-022) 32987543-33025168 processed_transcript
ENST00000463596 (APTX-007) 32973376-33001522 protein_coding
ENST00000464632 (APTX-018) 32984659-33001619 nonsense_mediated_decay
ENST00000465003 (APTX-001) 32972618-32990088 nonsense_mediated_decay
ENST00000467331 (APTX-012) 32972618-32990088 nonsense_mediated_decay
ENST00000468275 (APTX-017) 32973165-32997331 protein_coding
ENST00000472896 (APTX-013) 32972618-32990088 nonsense_mediated_decay
ENST00000473221 (APTX-025) 32984631-33001641 protein_coding
ENST00000473270 (APTX-023) 33015888-33025110 processed_transcript
ENST00000474658 (APTX-028) 32973242-33001579 nonsense_mediated_decay
ENST00000476858 (APTX-006) 32973376-33001641 protein_coding
ENST00000477119 (APTX-026) 32984772-33001612 protein_coding
ENST00000478279 (APTX-019) 32984659-33001619 nonsense_mediated_decay
ENST00000479656 (APTX-004) 32972763-32997360 nonsense_mediated_decay
ENST00000480031 (APTX-027) 32984715-33001597 nonsense_mediated_decay
ENST00000482687 (APTX-015) 32972618-32990088 nonsense_mediated_decay
ENST00000483148 (APTX-014) 32972618-32990088 nonsense_mediated_decay
ENST00000485479 (APTX-010) 32972618-32990088 nonsense_mediated_decay
ENST00000486724 (APTX-032) 32980388-32987762 processed_transcript
ENST00000489583 (APTX-024) 33019954-33024987 processed_transcript
ENST00000494649 (APTX-009) 32972616-33001521 nonsense_mediated_decay
ENST00000494973 (APTX-029) 32987777-33001628 retained_intron
ENST00000495360 (APTX-008) 32973407-33025112 nonsense_mediated_decay
ENST00000496030 (APTX-031) 32985989-32988134 retained_intron
ENSG00000188133 (TMEM215)
transmembrane protein 215 		ENST00000342743 (TMEM215-001) 32783499-32787399 protein_coding
ENSG00000223807 (RP11-562M8.4)
 ENST00000418151 (RP11-562M8.4-001) 32926051-32926450 processed_pseudogene
ENSG00000231193 (RP11-462B18.2)
 ENST00000424177 (RP11-462B18.2-001) 32840598-32841762 lincRNA
ENSG00000236184 (TCEA1P4)
transcription elongation factor A (SII), 1 pseudogene 4 		ENST00000415066 (TCEA1P4-001) 32979560-32980403 processed_pseudogene
ENSG00000236796 (RP11-462B18.3)
 ENST00000448273 (RP11-462B18.3-001) 32836575-32869595 unprocessed_pseudogene
ENSG00000237437 (ASS1P12)
argininosuccinate synthetase 1 pseudogene 12 		ENST00000452496 (ASS1P12-001) 32945996-32947222 processed_pseudogene
CIL_000655_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000046593-ENSMUSG00000028411 CGP 10090 4:40472180-40703194
GeneTranscriptPositionBiotype
ENSMUSG00000028411 (Aptx)
aprataxin 		ENSMUST00000030119 (Aptx-001) 40682382-40703194 protein_coding
ENSMUST00000068125 (Aptx-004) 40682382-40702914 protein_coding
ENSMUST00000108103 (Aptx-003) 40684924-40703162 protein_coding
ENSMUST00000128810 (Aptx-006) 40691003-40694507 processed_transcript
ENSMUST00000129021 (Aptx-002) 40686242-40703187 nonsense_mediated_decay
ENSMUST00000155710 (Aptx-005) 40695020-40702716 nonsense_mediated_decay
ENSMUSG00000046593 (Tmem215)
transmembrane protein 215 		ENSMUST00000049655 (Tmem215-001) 40472180-40477168 protein_coding
ENSMUST00000179526 (Tmem215-201) 40473130-40475653 protein_coding
ENSMUSG00000081720 (Gm12391)
predicted gene 12391 		ENSMUST00000117626 (Gm12391-001) 40678332-40678778 processed_pseudogene
ENSMUSG00000086355 (4933428C19Rik)
RIKEN cDNA 4933428C19 gene 		ENSMUST00000146043 (4933428C19Rik-001) 40482840-40525548 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000655_0001ENSG00000137074ENST00000309615ENST00000379813ENST00000379817ENST00000379819ENST00000379825ENST00000397172ENST00000460940ENST00000460945ENST00000463596ENST00000467331ENST00000468275ENST00000476858ENST00000479656ENST00000480031ENST00000482687ENST00000494649ENST00000495360ENST00000496030ENSG00000188133ENST00000342743ENSG00000223807ENST00000418151ENSG00000231193ENST00000424177ENSG00000236184ENST00000415066ENSG00000236796ENST00000448273ENSG00000237437ENST00000452496CIL_000655_0002ENSMUSG00000028411ENSMUST00000030119ENSMUST00000068125ENSMUST00000108103ENSMUST00000129021ENSMUSG00000046593ENSMUST00000049655ENSMUST00000179526ENSMUSG00000081720ENSMUST00000117626ENSMUSG00000086355ENSMUST00000146043
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000137074 ENST00000309615 1.006±0.00 N/A N/A 9.021±0.00 1.879±0.00 2.681±0.00 0.756±0.00 3.788±0.00 2.106±0.00 N/A N/A 3.466±0.92 1.218±0.00 N/A
ENST00000379812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000379813 N/A N/A N/A N/A N/A N/A 0.378±0.00 N/A N/A 4.506±0.00 N/A N/A N/A N/A
ENST00000379817 N/A N/A N/A N/A N/A N/A 0.278±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000379819 1.061±0.00 4.873±0.00 N/A 0.829±0.00 1.814±0.00 N/A 1.616±0.00 3.756±0.00 N/A N/A N/A 2.480±1.28 2.054±0.48 N/A
ENST00000379825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.711±0.00 N/A N/A
ENST00000397172 1.005±0.00 N/A N/A N/A 1.751±0.00 1.114±0.00 N/A N/A N/A N/A 1.892±0.00 0.938±0.00 N/A N/A
ENST00000436040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460940 N/A N/A N/A N/A 1.274±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460945 N/A N/A N/A N/A N/A N/A N/A 2.026±0.00 N/A N/A N/A N/A N/A N/A
ENST00000463596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.186±0.00
ENST00000464632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467331 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.993±0.00 N/A N/A
ENST00000468275 1.394±0.00 N/A N/A N/A N/A N/A 1.151±0.00 N/A N/A N/A N/A 9.387±0.00 7.765±0.00 6.879±0.00
ENST00000472896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473221 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473270 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476858 2.304±0.00 8.287±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.470±0.00 N/A N/A N/A
ENST00000477119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479656 N/A N/A N/A N/A N/A 2.450±0.00 N/A N/A 0.721±0.00 N/A N/A 5.389±0.00 1.623±0.00 6.748±0.00
ENST00000480031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.975±0.00 N/A N/A
ENST00000482687 N/A N/A N/A N/A N/A N/A N/A 1.815±0.00 N/A N/A N/A N/A N/A N/A
ENST00000483148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494649 N/A N/A N/A N/A 1.193±0.00 N/A N/A N/A 0.852±0.00 1.357±0.00 N/A N/A N/A N/A
ENST00000494973 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495360 N/A N/A N/A 0.919±0.00 N/A 1.809±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496030 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.013±0.00 N/A N/A
ENSG00000188133 ENST00000342743 0.026±0.00 0.048±0.00 N/A 0.157±0.00 0.024±0.00 N/A N/A 0.014±0.00 0.041±0.00 0.077±0.00 0.005±0.00 0.219±0.23 0.008±0.00 0.704±0.39
ENSG00000223807 ENST00000418151 N/A 0.110±0.00 N/A 0.076±0.00 0.109±0.00 N/A N/A N/A N/A N/A N/A 0.166±0.00 N/A N/A
ENSG00000231193 ENST00000424177 N/A N/A N/A 0.211±0.00 0.018±0.00 N/A N/A N/A N/A N/A N/A 0.050±0.00 N/A 0.206±0.00
ENSG00000236184 ENST00000415066 N/A N/A N/A N/A 2.024±0.00 N/A N/A N/A N/A 2.042±0.00 N/A N/A N/A N/A
ENSG00000236796 ENST00000448273 N/A 0.030±0.00 N/A N/A N/A N/A N/A N/A 0.017±0.00 N/A 0.178±0.00 N/A N/A N/A
ENSG00000237437 ENST00000452496 0.110±0.00 0.884±0.00 N/A 0.190±0.16 0.055±0.00 0.017±0.00 0.204±0.11 0.144±0.00 0.124±0.03 0.242±0.00 N/A 0.166±0.08 0.154±0.00 0.236±0.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028411 ENSMUST00000030119 0.496±0.07 N/A 1.379±0.27 1.604±0.46 0.494±0.39 0.449±0.26 0.645±0.27 0.292±0.00 0.383±0.09 0.502±0.00 1.309±0.45 0.743±0.35 0.532±0.13 N/A
ENSMUST00000068125 0.406±0.10 0.527±0.07 0.385±0.00 0.956±0.22 0.371±0.09 0.245±0.00 N/A 0.617±0.26 0.330±0.15 N/A N/A 0.920±0.56 0.688±0.29 N/A
ENSMUST00000108103 0.819±0.05 2.133±0.20 N/A N/A 1.299±0.48 1.502±0.20 0.714±0.01 0.929±0.30 0.493±0.16 1.995±0.36 N/A 2.446±0.60 0.935±0.08 N/A
ENSMUST00000128810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129021 4.804±0.88 0.946±0.22 6.109±0.78 7.852±2.04 2.774±0.83 1.144±0.49 3.116±0.20 3.403±0.19 2.530±0.67 2.914±0.54 5.307±0.51 4.147±3.81 8.944±1.65 63.036±40.69
ENSMUST00000155710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000046593 ENSMUST00000049655 N/A 0.036±0.00 0.004±0.00 0.168±0.20 N/A 0.016±0.00 0.014±0.00 0.075±0.01 0.010±0.01 0.025±0.00 N/A 0.085±0.05 0.011±0.00 0.013±0.00
ENSMUST00000179526 0.041±0.04 0.141±0.04 0.019±0.00 0.393±0.40 0.142±0.06 0.038±0.01 0.092±0.05 0.297±0.12 0.038±0.02 0.096±0.07 N/A 0.511±0.23 0.018±0.01 0.048±0.04
ENSMUSG00000081720 ENSMUST00000117626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.248±0.00 0.375±0.00 N/A N/A
ENSMUSG00000086355 ENSMUST00000146043 N/A N/A N/A 0.066±0.01 N/A N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A 0.099±0.00

Loading