C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family B (MDR/TAP), member 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000498578 ABCB8-008 ENSG00000197150 9606 + 7:151028462-151045563 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonKidneyLiverMuscleOvaryPlacentaTestisENST00000498578
Transcript ID Adipose Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENST00000498578 1.554±0.00 3.960±0.00 1.716±0.00 6.324±0.00 6.087±0.00 1.380±0.00 3.372±1.80 10.625±2.54 2.198±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0001 VISTA 7:150668461-151272977
CIL_0004O6 CIL_0004O6_0001 CGP 7:151012209-151047782
CIL_0004O7 CIL_0004O7_0001 CGP 7:151028422-151052756

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 TAS transporter activity
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005739 IDA mitochondrion
GO:0005740 TAS mitochondrial envelope
GO:0005743 IEA mitochondrial inner membrane
GO:0006200 IEA ATP catabolic process
GO:0006810 TAS:IEA transport
GO:0016020 TAS membrane
GO:0016021 IBA:IEA integral component of membrane
GO:0016887 IEA ATPase activity
GO:0042626 IBA:IEA ATPase activity, coupled to transmembrane movement of substances
GO:0043190 TAS ATP-binding cassette (ABC) transporter complex
GO:0055085 IBA:IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000073076 Abcb8-201 protein_coding Mus_musculus 0 1860
ENSMUST00000115077 Abcb8-001 protein_coding Mus_musculus 0 1860
ENSMUST00000115074 Abcb8-002 protein_coding Mus_musculus 0 1138
ENSMUST00000127816 Abcb8-007 retained_intron Mus_musculus 0 468
ENSMUST00000136459 Abcb8-003 retained_intron Mus_musculus 0 385

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