C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000498753 RP11-343B5.1-001 ENSG00000233597 9606 - 3:142043623-142044198 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000498753
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000498753 0.396±0.00 0.945±0.00 0.529±0.00 0.663±0.00 1.080±0.65 0.984±0.21 0.267±0.00 0.960±0.00 1.076±1.04 0.429±0.00 0.935±0.00 0.440±0.14 0.237±0.00 0.679±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008I1 CIL_0008I1_0001 VISTA 3:141560621-142161968

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121059 Rpl19-ps1-001 processed_pseudogene Mus_musculus 0 662
ENSMUST00000017548 Rpl19-001 protein_coding Mus_musculus 0 656
ENSMUST00000122422 Rpl19-ps11-001 processed_pseudogene Mus_musculus 0 651
ENSMUST00000092425 Rpl19-002 protein_coding Mus_musculus 0 649
ENSMUST00000121251 Rpl19-ps12-001 processed_pseudogene Mus_musculus 0 588
ENSMUST00000159343 Gm16238-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000121130 Gm15566-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000167150 Rpl19-ps4-201 processed_pseudogene Mus_musculus 0 494
ENSMUST00000117145 Gm13216-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000185957 RP23-297J19.2-001 processed_pseudogene Mus_musculus 0 237

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