C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 5937
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119715 Gm5937-001 ENSMUSG00000081622 10090 + X:77456586-77457228 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000119715
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000119715 0.232±0.11 0.649±0.25 0.220±0.02 1.173±0.27 0.413±0.21 0.371±0.11 0.116±0.06 0.230±0.02 0.218±0.16 0.236±0.09 0.115±0.05 0.705±0.62 0.208±0.11 0.648±0.53

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000111964 hmgb1a-201 protein_coding Danio_rerio 0 326
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 859
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 636
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 861
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 861
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 717
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 636
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 861
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 571
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 861
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 588
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 699
ENST00000429856 HMGB1P9-001 processed_pseudogene Homo_sapiens 0 688
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 411
ENST00000438594 HMGB1P12-001 processed_pseudogene Homo_sapiens 0 457
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 652
ENST00000447155 HMGB1P16-001 processed_pseudogene Homo_sapiens 0 510
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 671
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 593
ENST00000459868 FMO1-004 processed_transcript Homo_sapiens 0 217
ENST00000468384 HMGB1-007 processed_transcript Homo_sapiens 0 233
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 381
ENST00000490788 HMGB1-008 processed_transcript Homo_sapiens 0 296
ENST00000502313 HMGB1P21-001 processed_pseudogene Homo_sapiens 0 547
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 793
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 248
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 830
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 0 187
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 660

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