C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000502889 RP11-54D18.2-001 ENSG00000215237 9606 + 9:14993312-15019729 unprocessed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartLungMuscleOvaryPlacentaTestisENST00000502889
Transcript ID Adipose Brain Breast Heart Lung Muscle Ovary Placenta Testis
ENST00000502889 0.035±0.00 0.307±0.13 0.065±0.00 0.024±0.00 0.082±0.00 0.008±0.00 0.099±0.06 0.091±0.04 0.741±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000943 CIL_000943_0001 VISTA 9:14449160-15052146
CIL_00014A CIL_00014A_0001 CGP 9:14734666-15307360

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037190 2700029M09Rik-001 protein_coding Mus_musculus 0 1223
ENSMUST00000149267 2700029M09Rik-002 nonsense_mediated_decay Mus_musculus 0 785
ENSMUST00000134886 2700029M09Rik-003 retained_intron Mus_musculus 0 562
ENSMUST00000146863 2700029M09Rik-005 nonsense_mediated_decay Mus_musculus 0 366
ENSMUST00000136098 2700029M09Rik-004 nonsense_mediated_decay Mus_musculus 0 320

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