C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000943_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm56 VISTA 9606 9:14449160-15052146
GeneTranscriptPositionBiotype
ENSG00000147869 (CER1)
cerberus 1, DAN family BMP antagonist 		ENST00000380911 (CER1-001) 14719724-14722717 protein_coding
ENSG00000164946 (FREM1)
FRAS1 related extracellular matrix 1 		ENST00000380875 (FREM1-005) 14737200-14910995 nonsense_mediated_decay
ENST00000380880 (FREM1-001) 14737396-14910430 protein_coding
ENST00000380894 (FREM1-002) 14737152-14779533 protein_coding
ENST00000422223 (FREM1-201) 14734666-14910995 protein_coding
ENST00000427623 (FREM1-006) 14737366-14774161 nonsense_mediated_decay
ENST00000466679 (FREM1-007) 14775935-14792801 processed_transcript
ENST00000485068 (FREM1-009) 14775823-14784634 processed_transcript
ENST00000486223 (FREM1-010) 14751705-14775905 processed_transcript
ENST00000497634 (FREM1-004) 14784272-14792884 retained_intron
ENSG00000175893 (ZDHHC21)
zinc finger, DHHC-type containing 21 		ENST00000380916 (ZDHHC21-001) 14611071-14693471 protein_coding
ENST00000497966 (ZDHHC21-002) 14677366-14693265 processed_transcript
ENSG00000214110 (LDHAP4)
lactate dehydrogenase A pseudogene 4 		ENST00000397561 (LDHAP4-001) 14921337-14922334 processed_pseudogene
ENSG00000215237 (RP11-54D18.2)
 ENST00000502889 (RP11-54D18.2-001) 14993312-15019729 unprocessed_pseudogene
ENSG00000229029 (CDCA4P1)
cell division cycle associated 4 pseudogene 1 		ENST00000442667 (CDCA4P1-001) 14593577-14594200 processed_pseudogene
ENSG00000232000 (CLCN3P1)
chloride channel, voltage-sensitive 3 pseudogene 1 		ENST00000423965 (CLCN3P1-001) 15034161-15048061 transcribed_unprocessed_pseudogene
ENST00000609203 (CLCN3P1-002) 14987302-15146401 processed_transcript
ENSG00000272871 (RP11-408A13.4)
 ENST00000610061 (RP11-408A13.4-001) 14588797-14590065 lincRNA
ENSG00000273399 (RP11-408A13.3)
 ENST00000608871 (RP11-408A13.3-001) 14586766-14587326 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_000943_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm56 VISTA 10090 4:82615373-83218271
GeneTranscriptPositionBiotype
ENSMUSG00000008575 (Nfib)
nuclear factor I/B 		ENSMUST00000050872 (Nfib-201) 82290173-82505308 protein_coding
ENSMUST00000064770 (Nfib-202) 82290176-82505308 protein_coding
ENSMUST00000107245 (Nfib-001) 82290173-82505770 protein_coding
ENSMUST00000107246 (Nfib-007) 82296081-82505770 protein_coding
ENSMUST00000107247 (Nfib-003) 82296048-82505707 protein_coding
ENSMUST00000107248 (Nfib-002) 82296048-82505707 protein_coding
ENSMUST00000122918 (Nfib-006) 82326825-82505310 retained_intron
ENSMUST00000135024 (Nfib-008) 82495984-82505779 retained_intron
ENSMUST00000140874 (Nfib-005) 82328594-82505310 retained_intron
ENSMUST00000148982 (Nfib-011) 82353052-82505764 retained_intron
ENSMUST00000152588 (Nfib-009) 82498544-82499316 processed_transcript
ENSMUST00000155821 (Nfib-010) 82498321-82705750 protein_coding
ENSMUSG00000028403 (Zdhhc21)
zinc finger, DHHC domain containing 21 		ENSMUST00000030110 (Zdhhc21-001) 82798738-82859673 protein_coding
ENSMUST00000107239 (Zdhhc21-004) 82806209-82859958 protein_coding
ENSMUST00000139401 (Zdhhc21-003) 82838312-82850814 protein_coding
ENSMUST00000144139 (Zdhhc21-005) 82840368-82859554 retained_intron
ENSMUST00000156055 (Zdhhc21-002) 82847617-82859573 protein_coding
ENSMUST00000173741 (Zdhhc21-006) 82804047-82859561 nonsense_mediated_decay
ENSMUSG00000038192 (Cer1)
cerberus 1 homolog (Xenopus laevis) 		ENSMUST00000048430 (Cer1-001) 82881751-82885148 protein_coding
ENSMUSG00000059049 (Frem1)
Fras1 related extracellular matrix protein 1 		ENSMUST00000071708 (Frem1-201) 82897927-83021102 protein_coding
ENSMUST00000107230 (Frem1-001) 82897927-83052339 protein_coding
ENSMUST00000127886 (Frem1-002) 82938426-82970703 protein_coding
ENSMUST00000130889 (Frem1-005) 82915633-82924792 retained_intron
ENSMUST00000131102 (Frem1-003) 82992935-83052339 processed_transcript
ENSMUST00000133610 (Frem1-006) 82900564-82914434 processed_transcript
ENSMUST00000141841 (Frem1-004) 82936109-82940882 retained_intron
ENSMUST00000170248 (Frem1-202) 82897920-83052167 protein_coding
ENSMUSG00000083245 (Gm11185)
predicted gene 11185 		ENSMUST00000117732 (Gm11185-001) 83193988-83194994 processed_pseudogene
ENSMUSG00000086293 (Gm11269)
predicted gene 11269 		ENSMUST00000157011 (Gm11269-001) 82692805-82693711 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000943_0001ENSG00000147869ENST00000380911ENSG00000164946ENST00000380875ENST00000380880ENST00000380894ENST00000422223ENST00000427623ENST00000466679ENST00000485068ENST00000486223ENST00000497634ENSG00000175893ENST00000380916ENST00000497966ENSG00000214110ENST00000397561ENSG00000215237ENST00000502889ENSG00000229029ENST00000442667ENSG00000232000ENST00000423965ENST00000609203ENSG00000272871ENST00000610061ENSG00000273399ENST00000608871CIL_000943_0002ENSMUSG00000008575ENSMUST00000050872ENSMUST00000064770ENSMUST00000107245ENSMUST00000107246ENSMUST00000107247ENSMUST00000107248ENSMUST00000122918ENSMUST00000135024ENSMUST00000140874ENSMUST00000148982ENSMUST00000152588ENSMUST00000155821ENSMUSG00000028403ENSMUST00000030110ENSMUST00000107239ENSMUST00000139401ENSMUST00000144139ENSMUST00000156055ENSMUST00000173741ENSMUSG00000038192ENSMUST00000048430ENSMUSG00000059049ENSMUST00000071708ENSMUST00000107230ENSMUST00000127886ENSMUST00000130889ENSMUST00000131102ENSMUST00000133610ENSMUST00000141841ENSMUST00000170248ENSMUSG00000083245ENSMUST00000117732ENSMUSG00000086293ENSMUST00000157011
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000943_0001ENSG00000147869ENST00000380911ENSG00000164946ENST00000380875ENST00000380880ENST00000380894ENST00000422223ENST00000427623ENST00000466679ENSG00000175893ENST00000380916ENSG00000214110ENST00000397561ENSG00000215237ENST00000502889ENSG00000229029ENST00000442667ENSG00000232000ENST00000423965ENST00000609203ENSG00000272871ENST00000610061ENSG00000273399ENST00000608871CIL_000943_0002ENSMUSG00000008575ENSMUST00000050872ENSMUST00000064770ENSMUST00000107245ENSMUST00000107246ENSMUST00000107247ENSMUST00000107248ENSMUSG00000028403ENSMUST00000030110ENSMUST00000107239ENSMUST00000144139ENSMUST00000173741ENSMUSG00000038192ENSMUST00000048430ENSMUSG00000059049ENSMUST00000071708ENSMUST00000107230ENSMUST00000127886ENSMUST00000131102ENSMUST00000133610ENSMUST00000141841ENSMUST00000170248ENSMUSG00000083245ENSMUST00000117732ENSMUSG00000086293ENSMUST00000157011
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000147869 ENST00000380911 N/A 0.062±0.00 N/A 0.013±0.00 0.175±0.00 N/A 0.023±0.00 N/A N/A N/A N/A N/A N/A 0.054±0.00
ENSG00000164946 ENST00000380875 N/A N/A N/A N/A N/A N/A N/A 0.296±0.00 0.008±0.00 0.223±0.00 0.337±0.23 N/A 0.155±0.05 N/A
ENST00000380880 0.107±0.00 0.135±0.00 0.696±0.00 0.115±0.00 1.492±0.87 0.413±0.00 0.187±0.05 1.694±0.00 N/A N/A N/A 0.249±0.11 0.384±0.12 0.610±0.00
ENST00000380894 N/A N/A N/A 0.319±0.00 1.715±0.00 N/A 0.264±0.03 2.378±0.00 N/A 1.030±0.00 0.434±0.00 0.952±0.45 0.736±0.71 2.035±0.94
ENST00000422223 N/A N/A 0.810±0.00 N/A 0.323±0.00 N/A 0.099±0.00 N/A 0.357±0.00 0.073±0.00 N/A N/A 0.136±0.00 0.171±0.00
ENST00000427623 0.182±0.00 N/A N/A N/A N/A N/A 0.361±0.00 N/A 0.059±0.00 N/A N/A N/A N/A 1.102±0.00
ENST00000466679 N/A N/A N/A N/A N/A N/A N/A N/A 0.217±0.00 1.608±0.00 N/A N/A 0.521±0.00 N/A
ENST00000485068 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000175893 ENST00000380916 0.357±0.00 0.691±0.00 N/A 2.122±0.22 1.100±0.17 0.769±0.00 0.810±0.00 1.004±0.00 0.650±0.31 2.143±1.26 0.366±0.00 0.579±0.21 0.564±0.12 1.799±0.09
ENST00000497966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000214110 ENST00000397561 2.794±0.00 1.368±0.00 0.269±0.00 0.764±0.28 1.012±0.84 1.201±0.61 1.125±0.89 2.060±2.01 3.880±3.83 1.361±0.66 0.996±0.22 1.793±1.74 4.357±2.08 1.383±0.21
ENSG00000215237 ENST00000502889 0.035±0.00 N/A N/A 0.307±0.13 0.065±0.00 N/A 0.024±0.00 N/A N/A 0.082±0.00 0.008±0.00 0.099±0.06 0.091±0.04 0.741±0.05
ENSG00000229029 ENST00000442667 N/A 0.311±0.00 N/A 0.225±0.00 0.144±0.00 N/A 0.171±0.00 N/A N/A 0.088±0.00 N/A 0.300±0.20 0.089±0.01 0.114±0.09
ENSG00000232000 ENST00000423965 N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A N/A N/A N/A N/A N/A
ENST00000609203 0.006±0.00 0.096±0.00 0.254±0.00 0.047±0.00 0.115±0.05 0.005±0.00 0.033±0.00 0.035±0.00 0.232±0.00 0.030±0.00 N/A 0.018±0.00 0.020±0.00 0.252±0.04
ENSG00000272871 ENST00000610061 0.108±0.00 0.811±0.00 N/A 0.706±0.16 0.749±0.00 0.288±0.07 0.142±0.03 0.128±0.00 0.123±0.00 0.180±0.05 0.040±0.00 0.561±0.46 0.121±0.08 0.069±0.01
ENSG00000273399 ENST00000608871 N/A 0.291±0.00 N/A 0.022±0.00 0.484±0.32 N/A 0.039±0.00 0.102±0.00 N/A N/A N/A 0.452±0.32 N/A 0.077±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000008575 ENSMUST00000050872 4.890±1.65 3.903±1.13 1.975±0.45 7.048±1.28 3.093±0.42 2.597±0.61 N/A 2.273±0.44 2.282±2.04 8.668±1.01 N/A 2.321±0.67 0.367±0.16 0.207±0.07
ENSMUST00000064770 10.002±0.90 7.984±0.52 11.134±0.93 14.473±7.32 8.227±1.08 2.632±0.51 14.837±1.78 4.922±0.77 2.497±1.34 17.975±1.07 6.318±1.68 4.755±1.35 0.948±0.52 0.347±0.08
ENSMUST00000107245 2.949±0.01 1.607±0.03 3.258±0.97 N/A 1.604±0.29 0.920±0.27 N/A 0.778±0.00 0.297±0.01 3.826±0.17 1.345±0.00 1.116±0.26 0.426±0.20 0.126±0.01
ENSMUST00000107246 N/A N/A N/A 10.268±0.00 N/A N/A N/A N/A N/A N/A N/A 10.689±0.00 1.163±0.56 0.913±0.00
ENSMUST00000107247 N/A 2.390±0.71 N/A N/A 3.519±0.76 1.423±0.41 N/A 2.195±0.42 2.177±0.23 N/A N/A 2.219±0.56 N/A 0.131±0.00
ENSMUST00000107248 4.863±0.00 1.634±0.12 N/A N/A 3.194±1.26 1.247±0.00 N/A N/A 3.614±0.00 N/A N/A 1.422±0.42 N/A 0.202±0.00
ENSMUST00000122918 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000028403 ENSMUST00000030110 1.096±0.62 1.761±0.54 1.155±0.21 1.972±1.33 0.796±0.12 2.424±0.94 0.512±0.00 0.798±0.10 0.736±0.58 0.997±0.34 0.956±0.43 2.611±0.69 3.634±2.38 0.590±0.10
ENSMUST00000107239 1.521±0.00 N/A N/A N/A N/A 4.111±0.70 N/A N/A 2.902±0.00 3.004±0.00 N/A 3.562±0.60 N/A N/A
ENSMUST00000139401 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144139 0.811±0.33 0.705±0.11 N/A 1.533±0.38 1.095±0.32 N/A 0.463±0.04 0.854±0.16 0.795±0.26 1.360±0.40 N/A 1.407±0.61 N/A 1.373±0.65
ENSMUST00000156055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173741 1.831±0.00 2.264±0.67 N/A N/A 1.292±0.12 N/A N/A N/A 0.946±0.08 N/A N/A 1.998±0.16 N/A N/A
ENSMUSG00000038192 ENSMUST00000048430 N/A N/A N/A 0.033±0.03 0.019±0.00 N/A N/A 0.018±0.00 0.005±0.00 0.042±0.02 0.025±0.00 0.022±0.01 0.111±0.06 0.027±0.02
ENSMUSG00000059049 ENSMUST00000071708 0.073±0.00 0.081±0.05 0.250±0.00 0.302±0.06 N/A 0.095±0.01 0.039±0.00 N/A 0.034±0.02 0.288±0.00 0.033±0.02 1.195±0.09 0.212±0.11 N/A
ENSMUST00000107230 0.157±0.00 N/A N/A 0.513±0.01 0.928±0.00 0.227±0.00 N/A 0.550±0.00 0.237±0.17 0.582±0.00 N/A 1.584±1.01 0.448±0.35 N/A
ENSMUST00000127886 N/A 0.085±0.04 N/A N/A N/A 0.149±0.10 0.028±0.01 N/A N/A N/A N/A 1.765±0.14 N/A N/A
ENSMUST00000130889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131102 0.014±0.00 N/A N/A N/A N/A 0.162±0.00 N/A N/A 0.026±0.00 N/A 0.033±0.00 N/A N/A N/A
ENSMUST00000133610 N/A 0.385±0.00 N/A N/A N/A N/A N/A N/A 0.164±0.00 N/A N/A N/A N/A N/A
ENSMUST00000141841 N/A 0.210±0.10 N/A N/A N/A N/A N/A N/A 0.165±0.06 N/A N/A N/A N/A N/A
ENSMUST00000170248 0.153±0.11 0.117±0.02 0.597±0.03 0.637±0.00 1.484±0.68 0.188±0.00 N/A 1.054±0.12 0.135±0.05 0.586±0.09 0.032±0.00 2.302±0.99 0.438±0.33 N/A
ENSMUSG00000083245 ENSMUST00000117732 0.258±0.15 0.096±0.02 0.121±0.00 0.066±0.05 0.708±0.63 0.137±0.05 0.203±0.07 0.129±0.09 0.065±0.05 0.036±0.00 0.444±0.28 0.174±0.10 0.070±0.03 0.047±0.02
ENSMUSG00000086293 ENSMUST00000157011 N/A N/A N/A 0.052±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.947±2.71

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