C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | protocadherin 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000503492  |
PCDH1-003 |
ENSG00000156453 |
9606 | - |
5:141853373-141878409  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0006QH | CIL_0006QH_0001 | CGP | 5:141653401-141879246 |
| CIL_0006QI | CIL_0006QI_0001 | CGP | 5:141853111-141942047 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005509 | IEA | calcium ion binding |
| GO:0005886 | IEA | plasma membrane |
| GO:0007156 | IEA | homophilic cell adhesion via plasma membrane adhesion molecules |
| GO:0016020 | IEA | membrane |
| GO:0016021 | IEA | integral component of membrane |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000160721
|
Pcdh1-004 | protein_coding | Mus_musculus | 0 | 2676 |
|
ENSMUST00000159405
|
Pcdh1-005 | protein_coding | Mus_musculus | 0 | 1230 |
|
ENSMUST00000161701
|
Pcdh1-002 | protein_coding | Mus_musculus | 0 | 1098 |
|
ENSMUST00000057185
|
Pcdh1-001 | protein_coding | Mus_musculus | 0 | 1020 |
