C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159405 Pcdh1-005 ENSMUSG00000051375 10090 - 18:38196743-38211970 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000159405
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000159405 2.620±0.51 1.100±0.20 1.963±0.67 2.181±0.54 5.103±1.06 1.297±0.16 2.462±0.38 3.060±2.43 19.237±4.48 0.904±0.22 1.206±1.05 5.900±3.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006QH CIL_0006QH_0002 CGP 18:37972624-38212053
CIL_0006QI CIL_0006QI_0002 CGP 18:38185915-38262629

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005887 TAS integral component of plasma membrane
GO:0005911 TAS cell-cell junction
GO:0007156 TAS homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016339 TAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000287008 PCDH1-002 protein_coding Homo_sapiens 0 3964
ENST00000357517 PCDH1-005 processed_transcript Homo_sapiens 0 3886
ENST00000394536 PCDH1-001 protein_coding Homo_sapiens 0 4098
ENST00000503492 PCDH1-003 protein_coding Homo_sapiens 0 1230
ENST00000505937 PCDH1-008 nonsense_mediated_decay Homo_sapiens 0 383
ENST00000511044 PCDH1-004 processed_transcript Homo_sapiens 0 2867
ENST00000514773 PCDH1-007 protein_coding Homo_sapiens 0 547
ENST00000515351 PCDH1-006 protein_coding Homo_sapiens 0 2874

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