C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006QH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000120318-ENSG00000156453 CGP 9606 5:141653401-141879246
GeneTranscriptPositionBiotype
ENSG00000120318 (ARAP3)
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 		ENST00000239440 (ARAP3-001) 141653401-141682221 protein_coding
ENST00000504448 (ARAP3-005) 141672267-141680831 protein_coding
ENST00000508305 (ARAP3-002) 141653401-141682203 protein_coding
ENST00000512390 (ARAP3-003) 141653408-141666744 processed_transcript
ENST00000513878 (ARAP3-004) 141653791-141673160 protein_coding
ENST00000524066 (ARAP3-008) 141672768-141673387 processed_transcript
ENSG00000156453 (PCDH1)
protocadherin 1 		ENST00000287008 (PCDH1-002) 141853111-141878410 protein_coding
ENST00000357517 (PCDH1-005) 141863057-141869589 processed_transcript
ENST00000394536 (PCDH1-001) 141862652-141878410 protein_coding
ENST00000503492 (PCDH1-003) 141853373-141878409 protein_coding
ENST00000505937 (PCDH1-008) 141865062-141868882 nonsense_mediated_decay
ENST00000511044 (PCDH1-004) 141862885-141866202 processed_transcript
ENST00000514773 (PCDH1-007) 141868954-141879246 protein_coding
ENST00000515351 (PCDH1-006) 141863013-141868575 protein_coding
ENSG00000278925 (AC005753.1)
 ENST00000623837 (AC005753.1-001) 141825708-141826325 TEC
CIL_0006QH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024451-ENSMUSG00000051375 CGP 10090 18:37972624-38212053
GeneTranscriptPositionBiotype
ENSMUSG00000024451 (Arap3)
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 		ENSMUST00000042944 (Arap3-201) 37972624-37997574 protein_coding
ENSMUSG00000051375 (Pcdh1)
protocadherin 1 		ENSMUST00000057185 (Pcdh1-001) 38196694-38209762 protein_coding
ENSMUST00000159405 (Pcdh1-005) 38196743-38211970 protein_coding
ENSMUST00000160721 (Pcdh1-004) 38185915-38212053 protein_coding
ENSMUST00000161701 (Pcdh1-002) 38188888-38203163 protein_coding
ENSMUSG00000089983 (2010320O07Rik)
RIKEN cDNA 2010320O07 gene 		ENSMUST00000160935 (2010320O07Rik-001) 38209772-38229145 processed_transcript
ENSMUSG00000098608 (Mir6981)
microRNA 6981 		ENSMUST00000184293 (Mir6981-201) 37974503-37974617 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006QH_0001ENSG00000120318ENST00000239440ENST00000504448ENST00000508305ENST00000512390ENST00000513878ENST00000524066ENSG00000156453ENST00000287008ENST00000357517ENST00000394536ENST00000503492ENST00000505937ENST00000511044ENST00000514773ENST00000515351ENSG00000278925ENST00000623837CIL_0006QH_0002ENSMUSG00000024451ENSMUST00000042944ENSMUSG00000051375ENSMUST00000057185ENSMUST00000159405ENSMUST00000160721ENSMUST00000161701ENSMUSG00000089983ENSMUST00000160935ENSMUSG00000098608ENSMUST00000184293
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006QH_0001ENSG00000120318ENST00000239440ENST00000504448ENST00000508305ENST00000512390ENST00000513878ENSG00000156453ENST00000287008ENST00000357517ENST00000394536ENST00000511044ENST00000515351ENSG00000278925ENST00000623837CIL_0006QH_0002ENSMUSG00000024451ENSMUST00000042944ENSMUSG00000051375ENSMUST00000057185ENSMUST00000159405ENSMUST00000160721ENSMUST00000161701ENSMUSG00000089983ENSMUST00000160935ENSMUSG00000098608ENSMUST00000184293
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000120318 ENST00000239440 3.334±0.00 2.065±0.00 N/A N/A 2.267±0.00 2.703±0.00 1.642±1.46 2.224±0.00 N/A 4.025±0.00 N/A 2.380±0.83 1.758±0.62 0.499±0.00
ENST00000504448 N/A N/A N/A 0.109±0.00 N/A 0.533±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508305 N/A 1.027±0.00 N/A N/A N/A N/A 1.700±0.00 N/A 0.500±0.00 N/A N/A N/A N/A N/A
ENST00000512390 N/A 1.793±0.00 0.296±0.00 0.103±0.00 1.794±0.00 2.140±0.00 N/A N/A 0.250±0.02 N/A N/A 2.203±1.15 2.796±0.91 0.365±0.00
ENST00000513878 3.121±0.00 N/A N/A N/A 2.046±0.00 N/A N/A N/A N/A 3.159±0.00 N/A 2.758±0.00 N/A 0.908±0.02
ENST00000524066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000156453 ENST00000287008 N/A N/A 0.746±0.00 4.656±0.00 1.548±0.00 3.133±0.00 1.636±1.06 1.186±0.00 1.044±0.00 N/A N/A 0.841±0.04 3.892±0.00 0.926±0.00
ENST00000357517 N/A N/A 1.018±0.00 1.390±0.00 4.065±0.00 3.790±0.00 0.636±0.00 5.249±0.00 1.635±0.00 N/A 1.145±0.00 1.406±0.00 N/A N/A
ENST00000394536 9.719±0.00 8.307±0.00 N/A N/A 3.792±2.74 5.172±4.14 5.162±0.00 21.138±0.00 12.686±0.00 12.876±10.13 0.785±0.50 1.474±0.48 16.057±8.40 1.257±0.99
ENST00000503492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.174±0.00 N/A N/A
ENST00000514773 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515351 N/A N/A 1.681±0.00 N/A N/A N/A N/A N/A N/A N/A 1.164±0.00 2.437±0.00 4.407±0.00 N/A
ENSG00000278925 ENST00000623837 0.170±0.00 0.489±0.00 1.417±0.00 0.484±0.00 0.553±0.05 0.081±0.00 0.303±0.00 0.887±0.66 0.183±0.00 1.018±0.58 N/A 0.311±0.03 0.198±0.06 0.307±0.17
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024451 ENSMUST00000042944 10.201±6.25 5.830±0.99 1.559±0.09 1.542±0.85 7.496±0.69 2.631±1.17 10.206±2.12 4.445±1.49 3.012±1.53 41.175±2.79 3.514±0.63 2.849±1.40 5.646±4.84 0.233±0.10
ENSMUSG00000051375 ENSMUST00000057185 N/A N/A 0.956±0.00 N/A N/A 7.081±1.32 N/A N/A 1.920±1.70 N/A 0.763±0.19 2.401±0.00 3.540±2.56 N/A
ENSMUST00000159405 2.620±0.51 1.100±0.20 1.963±0.67 N/A 2.181±0.54 5.103±1.06 1.297±0.16 2.462±0.38 3.060±2.43 19.237±4.48 0.904±0.22 1.206±1.05 5.900±3.35 N/A
ENSMUST00000160721 N/A 0.958±0.19 N/A N/A N/A 1.504±0.18 N/A N/A N/A 5.154±0.39 N/A 0.542±0.03 0.891±0.00 1.620±0.11
ENSMUST00000161701 1.986±0.62 2.019±0.19 1.058±0.56 3.669±2.17 1.968±0.45 4.630±0.57 0.927±0.44 3.293±0.36 2.604±2.08 11.731±1.00 0.432±0.10 0.944±0.29 3.100±0.90 1.203±0.36
ENSMUSG00000089983 ENSMUST00000160935 0.078±0.00 N/A 0.205±0.03 0.323±0.33 N/A 0.338±0.16 0.146±0.00 0.119±0.05 0.033±0.00 0.119±0.02 N/A 0.168±0.00 0.130±0.08 N/A
ENSMUSG00000098608 ENSMUST00000184293 1711.590±198.82 N/A N/A N/A 1972.715±171.62 N/A 1434.795±127.73 3391.550±0.00 14.801±0.00 N/A 7.344±0.00 54.861±0.00 40.939±0.00 N/A

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