C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161701 Pcdh1-002 ENSMUSG00000051375 10090 - 18:38188888-38203163 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000161701
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000161701 1.986±0.62 2.019±0.19 1.058±0.56 3.669±2.17 1.968±0.45 4.630±0.57 0.927±0.44 3.293±0.36 2.604±2.08 11.731±1.00 0.432±0.10 0.944±0.29 3.100±0.90 1.203±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006QH CIL_0006QH_0002 CGP 18:37972624-38212053
CIL_0006QI CIL_0006QI_0002 CGP 18:38185915-38262629

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005887 TAS integral component of plasma membrane
GO:0005911 TAS cell-cell junction
GO:0007156 TAS homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016339 TAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000287008 PCDH1-002 protein_coding Homo_sapiens 0 4621
ENST00000357517 PCDH1-005 processed_transcript Homo_sapiens 0 3247
ENST00000394536 PCDH1-001 protein_coding Homo_sapiens 0 3247
ENST00000503492 PCDH1-003 protein_coding Homo_sapiens 0 1098
ENST00000505937 PCDH1-008 nonsense_mediated_decay Homo_sapiens 0 383
ENST00000511044 PCDH1-004 processed_transcript Homo_sapiens 0 2732
ENST00000515351 PCDH1-006 protein_coding Homo_sapiens 0 2739

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