C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000156453 PCDH1 9606 - 5:141853111-141879246 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000287008 PCDH1-002 141853111-141878410 protein_coding
  ENST00000357517 PCDH1-005 141863057-141869589 processed_transcript
  ENST00000394536 PCDH1-001 141862652-141878410 protein_coding
  ENST00000503492 PCDH1-003 141853373-141878409 protein_coding
  ENST00000505937 PCDH1-008 141865062-141868882 nonsense_mediated_decay
  ENST00000511044 PCDH1-004 141862885-141866202 processed_transcript
  ENST00000514773 PCDH1-007 141868954-141879246 protein_coding
  ENST00000515351 PCDH1-006 141863013-141868575 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000287008ENST00000357517ENST00000394536ENST00000511044ENST00000515351
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000287008 N/A N/A 0.746±0.00 4.656±0.00 1.548±0.00 3.133±0.00 1.636±1.06 1.186±0.00 1.044±0.00 N/A N/A 0.841±0.04 3.892±0.00 0.926±0.00
ENST00000357517 N/A N/A 1.018±0.00 1.390±0.00 4.065±0.00 3.790±0.00 0.636±0.00 5.249±0.00 1.635±0.00 N/A 1.145±0.00 1.406±0.00 N/A N/A
ENST00000394536 9.719±0.00 8.307±0.00 N/A N/A 3.792±2.74 5.172±4.14 5.162±0.00 21.138±0.00 12.686±0.00 12.876±10.13 0.785±0.50 1.474±0.48 16.057±8.40 1.257±0.99
ENST00000511044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.174±0.00 N/A N/A
ENST00000515351 N/A N/A 1.681±0.00 N/A N/A N/A N/A N/A N/A N/A 1.164±0.00 2.437±0.00 4.407±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006QH CIL_0006QH_0001 CGP 5:141653401-141879246
CIL_0006QI CIL_0006QI_0001 CGP 5:141853111-141942047

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005886 IEA:TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0005911 TAS cell-cell junction
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007267 TAS cell-cell signaling
GO:0007399 TAS nervous system development
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036175 pcdh1b protocadherin 1b protein_coding Danio_rerio
ENSDARG00000062720 pcdh1a protocadherin 1a protein_coding Danio_rerio
ENSMUSG00000051375 Pcdh1 protocadherin 1 protein_coding Mus_musculus

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