C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057185 Pcdh1-001 ENSMUSG00000051375 10090 - 18:38196694-38209762 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonLiverMuscleOvaryPlacentaENSMUST00000057185
Transcript ID Bladder Colon Liver Muscle Ovary Placenta
ENSMUST00000057185 0.956±0.00 7.081±1.32 1.920±1.70 0.763±0.19 2.401±0.00 3.540±2.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006QH CIL_0006QH_0002 CGP 18:37972624-38212053
CIL_0006QI CIL_0006QI_0002 CGP 18:38185915-38262629

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005887 TAS integral component of plasma membrane
GO:0005911 TAS cell-cell junction
GO:0007156 TAS homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016339 TAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000287008 PCDH1-002 protein_coding Homo_sapiens 0 3751
ENST00000357517 PCDH1-005 processed_transcript Homo_sapiens 0 3886
ENST00000394536 PCDH1-001 protein_coding Homo_sapiens 0 3886
ENST00000503492 PCDH1-003 protein_coding Homo_sapiens 0 1020
ENST00000505937 PCDH1-008 nonsense_mediated_decay Homo_sapiens 0 383
ENST00000511044 PCDH1-004 processed_transcript Homo_sapiens 0 2867
ENST00000514773 PCDH1-007 protein_coding Homo_sapiens 0 547
ENST00000515351 PCDH1-006 protein_coding Homo_sapiens 0 2874

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