C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: single-stranded DNA binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000504985 SSBP2-008 ENSG00000145687 9606 - 5:81419936-81513717 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyPlacentaENST00000504985
Transcript ID Kidney Placenta
ENST00000504985 0.487±0.00 1.192±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TJ CIL_0005TJ_0002 CGP 5:81330005-81751797
CIL_0005TK CIL_0005TK_0002 CGP 5:81413021-82276857

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004094 Ssbp2-001 protein_coding Mus_musculus 0 1842
ENSMUST00000042122 Ssbp2-004 protein_coding Mus_musculus 0 1685
ENSMUST00000117239 Gm12470-001 processed_pseudogene Mus_musculus 0 939
ENSMUST00000156547 Ssbp2-008 processed_transcript Mus_musculus 0 804
ENSMUST00000137658 Ssbp2-009 retained_intron Mus_musculus 0 582
ENSMUST00000137493 Ssbp2-003 retained_intron Mus_musculus 0 322
ENSMUST00000133984 Ssbp2-006 processed_transcript Mus_musculus 7e-31 139

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