C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12470
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117239 Gm12470-001 ENSMUSG00000081516 10090 + 4:53662296-53663344 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117239
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117239 0.102±0.04 0.026±0.00 0.289±0.09 0.096±0.05 0.153±0.08 0.101±0.04 0.064±0.02 0.036±0.02 0.058±0.02 0.049±0.00 0.189±0.13 0.053±0.02 0.100±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033S CIL_00033S_0002 CGP 4:53440413-53707009
CIL_00033Y CIL_00033Y_0002 CGP 4:53631471-53765785

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000320672 SSBP2-001 protein_coding Homo_sapiens 0 1290
ENST00000401636 RP3-492P14.2-001 processed_pseudogene Homo_sapiens 0 355
ENST00000504136 SSBP2-015 retained_intron Homo_sapiens 0 379
ENST00000504174 SSBP2-010 processed_transcript Homo_sapiens 0 647
ENST00000504985 SSBP2-008 protein_coding Homo_sapiens 0 939
ENST00000505980 SSBP2-007 protein_coding Homo_sapiens 0 857
ENST00000506960 SSBP2-014 retained_intron Homo_sapiens 0 231
ENST00000507472 SSBP2-017 processed_transcript Homo_sapiens 0 577
ENST00000507655 SSBP2-012 processed_transcript Homo_sapiens 0 874
ENST00000509013 SSBP2-013 protein_coding Homo_sapiens 0 719
ENST00000509053 SSBP2-006 protein_coding Homo_sapiens 0 767
ENST00000509743 SSBP2-019 processed_transcript Homo_sapiens 0 826
ENST00000510060 SSBP2-021 processed_transcript Homo_sapiens 0 464
ENST00000512098 SSBP2-011 processed_transcript Homo_sapiens 0 599
ENST00000512923 SSBP2-009 protein_coding Homo_sapiens 0 959
ENST00000513785 SSBP2-020 retained_intron Homo_sapiens 0 237
ENST00000514493 SSBP2-003 protein_coding Homo_sapiens 0 941
ENST00000515395 SSBP2-004 protein_coding Homo_sapiens 0 830
ENST00000615665 SSBP2-201 protein_coding Homo_sapiens 0 1179
ENST00000622130 SSBP2-202 protein_coding Homo_sapiens 0 1284

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