C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000505925 RP11-252I13.1-001 ENSG00000248827 9606 + 5:107724961-107727117 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLiverLungMuscleOvaryENST00000505925
Transcript ID Adrenal Breast Colon Liver Lung Muscle Ovary
ENST00000505925 0.005±0.00 0.026±0.00 0.005±0.00 0.033±0.00 0.024±0.00 0.009±0.00 0.004±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LI CIL_0008LI_0001 VISTA 5:107178160-107778978
CIL_0008LC CIL_0008LC_0001 VISTA 5:107273815-107875311
CIL_0004Z5 CIL_0004Z5_0001 CGP 5:107376889-108382098
CIL_0007UW CIL_0007UW_0001 VISTA 5:107664162-108267275

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161046 Usp7-002 protein_coding Mus_musculus 0 2518
ENSMUST00000160405 Usp7-001 protein_coding Mus_musculus 0 2518
ENSMUST00000162445 Usp7-004 processed_transcript Mus_musculus 0 2507
ENSMUST00000160326 Usp7-003 nonsense_mediated_decay Mus_musculus 0 2196
ENSDART00000150953 usp7-001 protein_coding Danio_rerio 0 1110
ENSDART00000024453 usp7-201 protein_coding Danio_rerio 0 1035
ENSMUST00000172505 Usp7-013 nonsense_mediated_decay Mus_musculus 0 987
ENSMUST00000159287 Usp7-007 retained_intron Mus_musculus 0 545
ENSMUST00000159503 Usp7-009 retained_intron Mus_musculus 0 263
ENSMUST00000162141 Usp7-010 retained_intron Mus_musculus 0 206

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