C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily C, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000506449 TRPC3-004 ENSG00000138741 9606 - 4:121879716-121933113 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastLiverMuscleOvaryTestisENST00000506449
Transcript ID Adipose Bladder Brain Breast Liver Muscle Ovary Testis
ENST00000506449 0.123±0.00 0.347±0.00 0.159±0.00 0.114±0.00 0.647±0.00 0.023±0.00 0.078±0.00 0.107±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007AB CIL_0007AB_0001 CGP 4:121824440-121951754
CIL_0007AC CIL_0007AC_0001 CGP 4:121879027-122362758

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005262 IEA calcium channel activity
GO:0005515 IEA protein binding
GO:0016021 IEA integral component of membrane
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029271 Trpc3-001 protein_coding Mus_musculus 0 2242
ENSMUST00000146475 Trpc3-002 processed_transcript Mus_musculus 0 756
ENSDART00000063619 TRPC7 (1 of 3)-201 protein_coding Danio_rerio 0 429
ENSDART00000138703 TRPC7 (1 of 3)-001 protein_coding Danio_rerio 0 429
ENSMUST00000133542 Trpc3-005 retained_intron Mus_musculus 0 318

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