C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | single-stranded DNA binding protein 2 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000509053  |
SSBP2-006 |
ENSG00000145687 |
9606 | - |
5:81419873-81751048  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0005TJ | CIL_0005TJ_0002 | CGP | 5:81330005-81751797 |
| CIL_0005TK | CIL_0005TK_0002 | CGP | 5:81413021-82276857 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003697 | NAS | single-stranded DNA binding |
| GO:0005515 | IEA | protein binding |
| GO:0005634 | IEA | nucleus |
| GO:0005737 | IDA | cytoplasm |
| GO:0006355 | NAS | regulation of transcription, DNA-templated |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000042122
|
Ssbp2-004 | protein_coding | Mus_musculus | 0 | 1413 |
|
ENSMUST00000004094
|
Ssbp2-001 | protein_coding | Mus_musculus | 0 | 948 |
|
ENSMUST00000137493
|
Ssbp2-003 | retained_intron | Mus_musculus | 0 | 787 |
|
ENSMUST00000156547
|
Ssbp2-008 | processed_transcript | Mus_musculus | 0 | 776 |
|
ENSMUST00000117239
|
Gm12470-001 | processed_pseudogene | Mus_musculus | 0 | 767 |
|
ENSMUST00000137658
|
Ssbp2-009 | retained_intron | Mus_musculus | 0 | 627 |
|
ENSMUST00000144659
|
Ssbp2-002 | retained_intron | Mus_musculus | 0 | 470 |
|
ENSMUST00000138488
|
Ssbp2-007 | nonsense_mediated_decay | Mus_musculus | 0 | 244 |
|
ENSMUST00000141381
|
Ssbp2-005 | retained_intron | Mus_musculus | 0 | 244 |
|
ENSMUST00000133984
|
Ssbp2-006 | processed_transcript | Mus_musculus | 0 | 211 |
