C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RasGEF domain family, member 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000509081 RASGEF1B-002 ENSG00000138670 9606 - 4:81426393-81471236 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonLiverMuscleTestisENST00000509081
Transcript ID Adipose Breast Colon Liver Muscle Testis
ENST00000509081 0.640±0.00 1.599±0.00 1.412±0.00 0.402±0.00 1.089±0.00 0.392±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000086 CIL_000086_0002 CGP 4:81087370-82044244
CIL_0008G8 CIL_0008G8_0001 VISTA 4:81293869-81895630

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005085 IEA guanyl-nucleotide exchange factor activity
GO:0005088 IDA Ras guanyl-nucleotide exchange factor activity
GO:0005622 IEA intracellular
GO:0005768 IEA endosome
GO:0007264 IEA small GTPase mediated signal transduction
GO:0032320 IDA positive regulation of Ras GTPase activity
GO:0043547 IEA positive regulation of GTPase activity
GO:0051056 IEA regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168092 Rasgef1b-002 protein_coding Mus_musculus 0 1967
ENSMUST00000031276 Rasgef1b-001 protein_coding Mus_musculus 0 1960
ENSMUST00000166484 Rasgef1b-003 protein_coding Mus_musculus 0 1286

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