C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RasGEF domain family, member 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031276 Rasgef1b-001 ENSMUSG00000029333 10090 - 5:99217426-99252927 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031276
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031276 0.808±0.66 1.116±0.39 0.955±0.24 6.690±0.66 1.071±0.15 7.930±2.47 0.338±0.14 1.862±0.64 1.581±0.73 4.335±0.53 0.122±0.18 3.817±1.83 4.006±1.39 1.173±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000086 CIL_000086_0003 CGP 5:98929773-99252927
CIL_0008G8 CIL_0008G8_0002 VISTA 5:99067893-99670406

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005088 ISS Ras guanyl-nucleotide exchange factor activity
GO:0005768 IEA endosome
GO:0007264 IEA small GTPase mediated signal transduction
GO:0032320 ISS positive regulation of Ras GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264400 RASGEF1B-001 protein_coding Homo_sapiens 0 2001
ENST00000335927 RASGEF1B-005 protein_coding Homo_sapiens 0 1391
ENST00000436139 RASGEF1B-003 protein_coding Homo_sapiens 0 503
ENST00000504863 RASGEF1B-006 protein_coding Homo_sapiens 0 826
ENST00000509081 RASGEF1B-002 protein_coding Homo_sapiens 0 1960
ENST00000514889 RASGEF1B-007 processed_transcript Homo_sapiens 0 226
ENST00000613784 RASGEF1B-201 protein_coding Homo_sapiens 0 503

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