C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008G8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm678 VISTA 9606 4:81293869-81895630
GeneTranscriptPositionBiotype
ENSG00000138670 (RASGEF1B)
RasGEF domain family, member 1B 		ENST00000264400 (RASGEF1B-001) 81427065-81471915 protein_coding
ENST00000335927 (RASGEF1B-005) 81427449-81471904 protein_coding
ENST00000436139 (RASGEF1B-003) 81450893-81471890 protein_coding
ENST00000504863 (RASGEF1B-006) 81434676-81471907 protein_coding
ENST00000507538 (RASGEF1B-004) 81458983-81471928 retained_intron
ENST00000509081 (RASGEF1B-002) 81426393-81471236 protein_coding
ENST00000512716 (RASGEF1B-008) 81459479-82044244 protein_coding
ENST00000514889 (RASGEF1B-007) 81452029-81457602 processed_transcript
ENST00000613784 (RASGEF1B-201) 81450894-81471890 protein_coding
ENSG00000248282 (RP11-112L18.1)
 ENST00000514835 (RP11-112L18.1-001) 81733385-81734207 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0008G8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm678 VISTA 10090 5:99067893-99670406
GeneTranscriptPositionBiotype
ENSMUSG00000029333 (Rasgef1b)
RasGEF domain family, member 1B 		ENSMUST00000031276 (Rasgef1b-001) 99217426-99252927 protein_coding
ENSMUST00000166484 (Rasgef1b-003) 99218774-99243240 protein_coding
ENSMUST00000166632 (Rasgef1b-004) 99227794-99234066 retained_intron
ENSMUST00000168092 (Rasgef1b-002) 99217426-99252927 protein_coding
ENSMUSG00000089627 (Gm16228)
predicted gene 16228 		ENSMUST00000162286 (Gm16228-001) 99610625-99611433 processed_pseudogene
ENSMUSG00000089809 (A930011G23Rik)
RIKEN cDNA A930011G23 gene 		ENSMUST00000142639 (A930011G23Rik-002) 99556527-99729065 retained_intron
ENSMUST00000146396 (A930011G23Rik-003) 99297244-99729045 protein_coding
ENSMUST00000160803 (A930011G23Rik-005) 99680247-99728821 processed_transcript
ENSMUST00000161148 (A930011G23Rik-004) 99723455-99729056 protein_coding
ENSMUST00000161516 (A930011G23Rik-001) 99375026-99729062 protein_coding
ENSMUSG00000090006 (Gm16227)
predicted gene 16227 		ENSMUST00000160088 (Gm16227-001) 99509944-99510682 sense_intronic
ENSMUSG00000090146 (4930405H06Rik)
RIKEN cDNA 4930405H06 gene 		ENSMUST00000159244 (4930405H06Rik-001) 99625836-99627062 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008G8_0001ENSG00000138670ENST00000264400ENST00000335927ENST00000436139ENST00000504863ENST00000507538ENST00000509081ENST00000512716ENST00000514889ENST00000613784ENSG00000248282ENST00000514835CIL_0008G8_0002ENSMUSG00000029333ENSMUST00000031276ENSMUST00000166484ENSMUST00000166632ENSMUST00000168092ENSMUSG00000089627ENSMUST00000162286ENSMUSG00000089809ENSMUST00000142639ENSMUST00000146396ENSMUST00000160803ENSMUST00000161148ENSMUST00000161516ENSMUSG00000090006ENSMUST00000160088ENSMUSG00000090146ENSMUST00000159244
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008G8_0001ENSG00000138670ENST00000264400ENST00000335927ENST00000436139ENST00000504863ENST00000509081ENST00000613784ENSG00000248282ENST00000514835CIL_0008G8_0002ENSMUSG00000029333ENSMUST00000031276ENSMUST00000166484ENSMUST00000166632ENSMUST00000168092ENSMUSG00000089627ENSMUST00000162286ENSMUSG00000089809ENSMUST00000142639ENSMUST00000146396ENSMUST00000160803ENSMUST00000161148ENSMUST00000161516ENSMUSG00000090006ENSMUST00000160088ENSMUSG00000090146ENSMUST00000159244
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138670 ENST00000264400 1.580±0.00 0.899±0.00 0.711±0.00 1.671±0.08 1.543±0.95 0.536±0.00 0.552±0.00 1.496±0.06 1.634±1.22 4.531±0.66 0.583±0.00 1.161±0.55 0.857±0.20 0.955±0.59
ENST00000335927 N/A N/A N/A N/A N/A N/A 0.165±0.00 3.930±0.00 0.775±0.00 3.525±0.46 N/A 0.647±0.03 2.681±0.00 N/A
ENST00000436139 N/A 0.276±0.00 0.750±0.00 N/A N/A 0.704±0.00 0.107±0.00 N/A N/A 1.426±1.05 N/A 0.754±0.00 N/A N/A
ENST00000504863 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.412±0.00 N/A N/A N/A
ENST00000507538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509081 0.640±0.00 N/A N/A N/A 1.599±0.00 1.412±0.00 N/A N/A 0.402±0.00 N/A 1.089±0.00 N/A N/A 0.392±0.00
ENST00000512716 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.258±0.00 N/A N/A N/A
ENSG00000248282 ENST00000514835 N/A N/A 0.110±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029333 ENSMUST00000031276 0.808±0.66 1.116±0.39 0.955±0.24 6.690±0.66 1.071±0.15 7.930±2.47 0.338±0.14 1.862±0.64 1.581±0.73 4.335±0.53 0.122±0.18 3.817±1.83 4.006±1.39 1.173±0.23
ENSMUST00000166484 N/A 1.810±0.00 N/A 9.584±0.00 N/A 8.169±1.47 N/A N/A N/A N/A 0.057±0.05 6.703±0.00 5.848±2.47 2.320±0.00
ENSMUST00000166632 N/A N/A N/A 32.723±0.00 N/A N/A N/A N/A N/A N/A N/A 14.643±0.00 19.807±4.80 1.556±0.00
ENSMUST00000168092 1.137±0.98 1.430±0.00 1.790±0.47 8.800±0.88 1.106±0.40 4.877±1.63 1.315±0.17 2.649±1.01 1.920±1.39 6.391±1.54 0.041±0.01 3.166±1.80 3.639±1.07 0.552±0.31
ENSMUSG00000089627 ENSMUST00000162286 N/A N/A N/A 0.058±0.04 N/A N/A N/A 0.040±0.00 N/A N/A N/A N/A N/A 0.099±0.01
ENSMUSG00000089809 ENSMUST00000142639 0.074±0.00 0.088±0.04 0.013±0.00 0.089±0.00 N/A N/A 0.028±0.01 0.035±0.00 0.070±0.00 0.058±0.01 N/A 0.224±0.11 0.012±0.00 0.060±0.00
ENSMUST00000146396 0.061±0.03 N/A 0.020±0.00 N/A 0.011±0.00 0.118±0.02 0.032±0.00 0.015±0.00 0.030±0.03 0.012±0.00 N/A 0.054±0.08 0.012±0.00 N/A
ENSMUST00000160803 0.344±0.00 N/A N/A N/A N/A N/A 0.137±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161148 0.130±0.03 N/A 0.021±0.01 0.116±0.00 0.033±0.01 0.023±0.00 0.102±0.00 0.163±0.07 0.007±0.00 0.034±0.01 0.011±0.00 0.113±0.07 0.021±0.01 N/A
ENSMUST00000161516 0.074±0.00 N/A 0.009±0.00 0.084±0.00 0.036±0.00 0.044±0.01 0.033±0.02 0.081±0.06 0.017±0.01 0.015±0.00 N/A 0.142±0.12 0.026±0.00 0.988±0.67
ENSMUSG00000090006 ENSMUST00000160088 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.120±1.40
ENSMUSG00000090146 ENSMUST00000159244 N/A N/A 0.034±0.00 0.060±0.00 N/A N/A N/A N/A N/A N/A N/A 0.585±0.00 N/A 2.447±1.23

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