C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000086_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000054741-ENSDARG00000033614 CGP 7955 5:41285722-41411575
GeneTranscriptPositionBiotype
ENSDARG00000033614 (rasgef1ba)
RasGEF domain family, member 1Ba 		ENSDART00000127123 (rasgef1ba-001) 41313283-41342338 protein_coding
ENSDART00000133231 (rasgef1ba-003) 41382626-41411561 processed_transcript
ENSDART00000137801 (rasgef1ba-002) 41314276-41411575 protein_coding
ENSDARG00000054741 (prkg2)
protein kinase, cGMP-dependent, type II 		ENSDART00000076929 (prkg2-001) 41285722-41304179 protein_coding
CIL_000086_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138669-ENSG00000138670 CGP 9606 4:81087370-82044244
GeneTranscriptPositionBiotype
ENSG00000138669 (PRKG2)
protein kinase, cGMP-dependent, type II 		ENST00000264399 (PRKG2-201) 81087370-81215117 protein_coding
ENST00000395578 (PRKG2-001) 81088683-81215034 protein_coding
ENST00000456882 (PRKG2-004) 81140628-81154144 processed_transcript
ENST00000509169 (PRKG2-002) 81089493-81154157 processed_transcript
ENST00000509474 (PRKG2-003) 81089597-81154253 processed_transcript
ENST00000545647 (PRKG2-202) 81087370-81153732 protein_coding
ENSG00000138670 (RASGEF1B)
RasGEF domain family, member 1B 		ENST00000264400 (RASGEF1B-001) 81427065-81471915 protein_coding
ENST00000335927 (RASGEF1B-005) 81427449-81471904 protein_coding
ENST00000436139 (RASGEF1B-003) 81450893-81471890 protein_coding
ENST00000504863 (RASGEF1B-006) 81434676-81471907 protein_coding
ENST00000507538 (RASGEF1B-004) 81458983-81471928 retained_intron
ENST00000509081 (RASGEF1B-002) 81426393-81471236 protein_coding
ENST00000512716 (RASGEF1B-008) 81459479-82044244 protein_coding
ENST00000514889 (RASGEF1B-007) 81452029-81457602 processed_transcript
ENST00000613784 (RASGEF1B-201) 81450894-81471890 protein_coding
ENSG00000248282 (RP11-112L18.1)
 ENST00000514835 (RP11-112L18.1-001) 81733385-81734207 processed_pseudogene
ENSG00000248448 (COX5BP1)
cytochrome c oxidase subunit Vb pseudogene 1 		ENST00000507622 (COX5BP1-001) 81919995-81920387 processed_pseudogene
ENSG00000248543 (NPM1P41)
nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 41 		ENST00000512920 (NPM1P41-001) 82010665-82013095 processed_pseudogene
ENSG00000251059 (RP11-100N20.1)
 ENST00000505175 (RP11-100N20.1-002) 81173875-81193180 antisense
ENST00000512502 (RP11-100N20.1-001) 81164940-81193395 antisense
CIL_000086_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029334-ENSMUSG00000029333 CGP 10090 5:98929773-99252927
GeneTranscriptPositionBiotype
ENSMUSG00000029333 (Rasgef1b)
RasGEF domain family, member 1B 		ENSMUST00000031276 (Rasgef1b-001) 99217426-99252927 protein_coding
ENSMUST00000166484 (Rasgef1b-003) 99218774-99243240 protein_coding
ENSMUST00000166632 (Rasgef1b-004) 99227794-99234066 retained_intron
ENSMUST00000168092 (Rasgef1b-002) 99217426-99252927 protein_coding
ENSMUSG00000029334 (Prkg2)
protein kinase, cGMP-dependent, type II 		ENSMUST00000031277 (Prkg2-002) 98931720-99037035 protein_coding
ENSMUST00000160765 (Prkg2-004) 98947393-98966756 retained_intron
ENSMUST00000161490 (Prkg2-001) 98929773-99037351 protein_coding
ENSMUST00000162147 (Prkg2-003) 98931268-98943834 retained_intron
ENSMUST00000162619 (Prkg2-005) 98931268-98943832 processed_transcript
ENSMUSG00000089659 (Gm3470)
predicted gene 3470 		ENSMUST00000160819 (Gm3470-001) 99021803-99022222 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000086_0001ENSDARG00000033614ENSDART00000127123ENSDART00000133231ENSDART00000137801ENSDARG00000054741ENSDART00000076929CIL_000086_0002ENSG00000138669ENST00000264399ENST00000395578ENST00000456882ENST00000509169ENST00000509474ENST00000545647ENSG00000138670ENST00000264400ENST00000335927ENST00000436139ENST00000504863ENST00000507538ENST00000509081ENST00000512716ENST00000514889ENST00000613784ENSG00000248282ENST00000514835ENSG00000248448ENST00000507622ENSG00000248543ENST00000512920ENSG00000251059ENST00000505175ENST00000512502CIL_000086_0003ENSMUSG00000029333ENSMUST00000031276ENSMUST00000166484ENSMUST00000166632ENSMUST00000168092ENSMUSG00000029334ENSMUST00000031277ENSMUST00000160765ENSMUST00000161490ENSMUST00000162147ENSMUST00000162619ENSMUSG00000089659ENSMUST00000160819
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000086_0001ENSDARG00000033614ENSDART00000127123ENSDARG00000054741ENSDART00000076929CIL_000086_0002ENSG00000138669ENST00000264399ENST00000395578ENST00000456882ENST00000509474ENST00000545647ENSG00000138670ENST00000264400ENST00000335927ENST00000436139ENST00000504863ENST00000509081ENST00000613784ENSG00000248282ENST00000514835ENSG00000248448ENST00000507622ENSG00000248543ENST00000512920ENSG00000251059ENST00000505175ENST00000512502CIL_000086_0003ENSMUSG00000029333ENSMUST00000031276ENSMUST00000166484ENSMUST00000166632ENSMUST00000168092ENSMUSG00000029334ENSMUST00000031277ENSMUST00000160765ENSMUST00000161490ENSMUST00000162147ENSMUST00000162619ENSMUSG00000089659ENSMUST00000160819
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000033614 ENSDART00000127123 N/A N/A N/A 27.597±12.76 N/A N/A 12.067±6.89 22.261±3.76 2.098±0.00 N/A 39.911±0.00 N/A N/A N/A
ENSDART00000133231 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000137801 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000054741 ENSDART00000076929 N/A N/A N/A 0.118±0.05 N/A N/A 0.020±0.00 0.541±0.00 N/A N/A 0.189±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138669 ENST00000264399 N/A 0.048±0.00 0.035±0.00 N/A 0.145±0.07 N/A 0.023±0.00 N/A N/A N/A N/A 0.022±0.01 0.015±0.00 0.273±0.18
ENST00000395578 N/A N/A N/A 0.121±0.00 0.170±0.00 N/A N/A N/A N/A 0.337±0.00 N/A 0.054±0.02 N/A 0.168±0.00
ENST00000456882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.078±0.00 N/A N/A
ENST00000509169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509474 0.309±0.00 N/A 0.274±0.00 N/A 0.237±0.00 N/A N/A N/A N/A 0.336±0.00 N/A 0.193±0.00 N/A 0.299±0.00
ENST00000545647 N/A N/A 0.029±0.00 N/A N/A N/A N/A N/A N/A N/A 0.047±0.00 0.018±0.01 0.020±0.00 N/A
ENSG00000138670 ENST00000264400 1.580±0.00 0.899±0.00 0.711±0.00 1.671±0.08 1.543±0.95 0.536±0.00 0.552±0.00 1.496±0.06 1.634±1.22 4.531±0.66 0.583±0.00 1.161±0.55 0.857±0.20 0.955±0.59
ENST00000335927 N/A N/A N/A N/A N/A N/A 0.165±0.00 3.930±0.00 0.775±0.00 3.525±0.46 N/A 0.647±0.03 2.681±0.00 N/A
ENST00000436139 N/A 0.276±0.00 0.750±0.00 N/A N/A 0.704±0.00 0.107±0.00 N/A N/A 1.426±1.05 N/A 0.754±0.00 N/A N/A
ENST00000504863 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.412±0.00 N/A N/A N/A
ENST00000507538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509081 0.640±0.00 N/A N/A N/A 1.599±0.00 1.412±0.00 N/A N/A 0.402±0.00 N/A 1.089±0.00 N/A N/A 0.392±0.00
ENST00000512716 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.258±0.00 N/A N/A N/A
ENSG00000248282 ENST00000514835 N/A N/A 0.110±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000248448 ENST00000507622 N/A N/A N/A 0.203±0.00 N/A N/A N/A N/A N/A N/A N/A 0.396±0.00 N/A 0.043±0.00
ENSG00000248543 ENST00000512920 N/A N/A N/A N/A N/A N/A 0.011±0.00 N/A N/A 0.011±0.00 N/A 0.015±0.00 N/A N/A
ENSG00000251059 ENST00000505175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.211±0.00
ENST00000512502 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.220±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029333 ENSMUST00000031276 0.808±0.66 1.116±0.39 0.955±0.24 6.690±0.66 1.071±0.15 7.930±2.47 0.338±0.14 1.862±0.64 1.581±0.73 4.335±0.53 0.122±0.18 3.817±1.83 4.006±1.39 1.173±0.23
ENSMUST00000166484 N/A 1.810±0.00 N/A 9.584±0.00 N/A 8.169±1.47 N/A N/A N/A N/A 0.057±0.05 6.703±0.00 5.848±2.47 2.320±0.00
ENSMUST00000166632 N/A N/A N/A 32.723±0.00 N/A N/A N/A N/A N/A N/A N/A 14.643±0.00 19.807±4.80 1.556±0.00
ENSMUST00000168092 1.137±0.98 1.430±0.00 1.790±0.47 8.800±0.88 1.106±0.40 4.877±1.63 1.315±0.17 2.649±1.01 1.920±1.39 6.391±1.54 0.041±0.01 3.166±1.80 3.639±1.07 0.552±0.31
ENSMUSG00000029334 ENSMUST00000031277 N/A 0.295±0.10 N/A 2.334±0.00 0.120±0.06 N/A 0.010±0.00 0.151±0.05 0.019±0.01 0.934±0.28 0.089±0.03 0.178±0.04 0.175±0.07 0.013±0.00
ENSMUST00000160765 0.110±0.00 N/A N/A N/A 0.359±0.00 N/A N/A N/A N/A N/A N/A N/A 1.940±0.00 N/A
ENSMUST00000161490 0.188±0.15 0.682±0.04 0.171±0.01 0.570±0.51 0.111±0.06 1.956±0.77 0.039±0.01 0.091±0.02 0.011±0.01 2.397±0.59 0.103±0.05 0.298±0.20 0.431±0.36 0.009±0.00
ENSMUST00000162147 N/A N/A N/A N/A N/A N/A N/A N/A 0.004±0.00 N/A N/A N/A 0.092±0.00 N/A
ENSMUST00000162619 N/A N/A N/A N/A 0.133±0.00 N/A N/A N/A 0.085±0.00 N/A N/A N/A 0.031±0.00 N/A
ENSMUSG00000089659 ENSMUST00000160819 3.875±1.65 0.516±0.24 1.031±0.11 0.086±0.06 2.258±0.85 1.765±1.19 1.776±1.29 4.074±2.28 0.374±0.31 0.776±0.16 N/A 4.411±2.66 0.165±0.01 0.337±0.05

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