C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synuclein, alpha interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000510003 SNCAIP-005 ENSG00000064692 9606 + 5:122312237-122441277 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartKidneyLiverLungOvaryENST00000510003
Transcript ID Colon Heart Kidney Liver Lung Ovary
ENST00000510003 0.796±0.00 0.347±0.00 0.698±0.00 0.229±0.00 0.614±0.00 1.251±0.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KK CIL_0005KK_0002 CGP 5:122311354-122830108

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178011 Sncaip-005 protein_coding Mus_musculus 0 1555
ENSMUST00000163742 Sncaip-004 protein_coding Mus_musculus 0 1552
ENSMUST00000025413 Sncaip-003 protein_coding Mus_musculus 0 1552
ENSMUST00000178678 Sncaip-001 protein_coding Mus_musculus 0 1552
ENSMUST00000115410 Sncaip-002 protein_coding Mus_musculus 0 1552
ENSMUST00000179625 Sncaip-011 protein_coding Mus_musculus 0 989
ENSMUST00000180259 Sncaip-009 nonsense_mediated_decay Mus_musculus 0 326
ENSMUST00000178883 Sncaip-007 nonsense_mediated_decay Mus_musculus 0 326
ENSMUST00000177861 Sncaip-008 nonsense_mediated_decay Mus_musculus 0 237
ENSMUST00000179038 Sncaip-012 protein_coding Mus_musculus 2e-22 111
ENSMUST00000179689 Sncaip-010 protein_coding Mus_musculus 2e-17 95

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