C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal recognition particle 72kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000510663 SRP72-005 ENSG00000174780 9606 + 4:56467617-56502482 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000510663
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000510663 12.368±0.00 7.143±0.00 10.688±0.00 5.487±1.57 8.102±0.00 3.090±2.12 4.172±1.58 6.162±0.00 8.311±0.00 2.344±2.08 6.430±2.27 7.917±1.66 10.963±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G9 CIL_0008G9_0001 VISTA 4:56396035-56999166
CIL_0001WO CIL_0001WO_0001 CGP 4:56435741-56503680
CIL_0001WL CIL_0001WL_0001 CGP 4:56466915-56524448

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005047 IPI signal recognition particle binding
GO:0005783 IDA endoplasmic reticulum
GO:0005786 IDA signal recognition particle, endoplasmic reticulum targeting
GO:0005829 TAS cytosol
GO:0006412 TAS translation
GO:0006614 TAS:IEA SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding
GO:0010467 TAS gene expression
GO:0042493 IDA response to drug
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0048500 IEA signal recognition particle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120550 Srp72-002 protein_coding Mus_musculus 0 2518
ENSMUST00000101087 Srp72-001 protein_coding Mus_musculus 0 1657
ENSMUST00000141873 Srp72-003 retained_intron Mus_musculus 0 747
ENSMUST00000150661 Srp72-005 retained_intron Mus_musculus 0 664
ENSMUST00000132860 Srp72-004 retained_intron Mus_musculus 0 566
ENSMUST00000146167 Srp72-008 retained_intron Mus_musculus 0 366
ENSMUST00000125732 Srp72-007 retained_intron Mus_musculus 0 361
ENSMUST00000144741 Srp72-009 retained_intron Mus_musculus 0 233

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