C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetraspanin 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000515708 TSPAN17-002 ENSG00000048140 9606 + 5:176647568-176659053 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainHeartLiverLungMuscleOvaryPlacentaTestisENST00000515708
Transcript ID Adipose Adrenal Brain Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000515708 1.878±0.00 2.943±0.00 1.580±0.00 1.659±0.80 1.181±0.13 1.852±0.80 2.924±0.00 3.580±1.44 1.488±0.01 2.444±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0001 VISTA 5:176349731-176951529
CIL_0002NB CIL_0002NB_0001 CGP 5:176630682-176659054
CIL_0002NA CIL_0002NA_0001 CGP 5:176647387-176880895

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 NAS ubiquitin ligase complex
GO:0004842 NAS ubiquitin-protein transferase activity
GO:0016021 IEA integral component of membrane
GO:0016567 NAS protein ubiquitination
GO:0019899 IPI enzyme binding
GO:0072594 IDA establishment of protein localization to organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000131692 Tspan17-002 protein_coding Mus_musculus 0 1109
ENSMUST00000026993 Tspan17-001 protein_coding Mus_musculus 0 1109
ENSMUST00000099503 Tspan17-009 protein_coding Mus_musculus 0 1018
ENSMUST00000130568 Tspan17-005 protein_coding Mus_musculus 0 778
ENSMUST00000145574 Tspan17-003 protein_coding Mus_musculus 0 658
ENSMUST00000163796 Tspan17-007 protein_coding Mus_musculus 0 634
ENSDART00000075178 tspan5a-201 protein_coding Danio_rerio 0 442
ENSDART00000126739 tspan5a-202 protein_coding Danio_rerio 0 442
ENSDART00000101132 TSPAN17-201 protein_coding Danio_rerio 0 353
ENSMUST00000171859 Tspan17-008 protein_coding Mus_musculus 0 350
ENSMUST00000163915 Tspan17-006 protein_coding Mus_musculus 5e-34 150

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