C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetraspanin 5a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000126739 tspan5a-202 ENSDARG00000086033 7955 - 7:72315693-72354359 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000126739
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000126739 17.632±0.00 10.825±4.25 4.853±1.39 0.502±0.00 9.860±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005C0 CIL_0005C0_0001 CGP 7:72254544-72354607

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298564 TSPAN17-009 protein_coding Homo_sapiens 1e-20 106
ENST00000310032 TSPAN17-001 protein_coding Homo_sapiens 0 416
ENST00000503030 TSPAN17-005 nonsense_mediated_decay Homo_sapiens 3e-32 143
ENST00000503045 TSPAN17-008 protein_coding Homo_sapiens 0 239
ENST00000504168 TSPAN17-007 protein_coding Homo_sapiens 0 298
ENST00000507471 TSPAN17-006 protein_coding Homo_sapiens 0 315
ENST00000508164 TSPAN17-003 protein_coding Homo_sapiens 0 453
ENST00000514705 TSPAN17-004 retained_intron Homo_sapiens 0 215
ENST00000515708 TSPAN17-002 protein_coding Homo_sapiens 0 442

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