C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 52
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000518264 NPM1P52-001 ENSG00000253663 9606 + 8:103016744-103017589 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonKidneyLungOvaryTestisENST00000518264
Transcript ID Adipose Brain Colon Kidney Lung Ovary Testis
ENST00000518264 0.011±0.00 0.011±0.00 0.178±0.07 0.011±0.00 0.010±0.00 0.025±0.00 0.117±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004T5 CIL_0004T5_0003 CGP 8:102826357-103073051

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 540
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 503
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 464
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 462
ENSMUST00000120677 Gm12583-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 311
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000117205 Gm13423-001 processed_pseudogene Mus_musculus 2e-23 113

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