C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12583
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120677 Gm12583-001 ENSMUSG00000082878 10090 + 3:37108174-37109026 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLiverOvaryPlacentaTestisENSMUST00000120677
Transcript ID Brain Kidney Liver Ovary Placenta Testis
ENSMUST00000120677 0.038±0.02 0.073±0.00 0.008±0.00 0.053±0.00 0.059±0.00 1.229±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007AD CIL_0007AD_0002 CGP 3:36863106-37121924
CIL_0007AE CIL_0007AE_0002 CGP 3:37063527-37125959

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290855 CLEC2D-001 protein_coding Homo_sapiens 0 595
ENST00000296930 NPM1-001 protein_coding Homo_sapiens 0 822
ENST00000351986 NPM1-002 protein_coding Homo_sapiens 0 551
ENST00000393820 NPM1-003 protein_coding Homo_sapiens 0 737
ENST00000396690 CLEC2D-001 processed_pseudogene Homo_sapiens 0 595
ENST00000399556 NPM1P46-001 processed_pseudogene Homo_sapiens 0 680
ENST00000403105 NPM1P37-001 processed_pseudogene Homo_sapiens 0 719
ENST00000412580 NPM1P32-001 processed_pseudogene Homo_sapiens 0 418
ENST00000426339 NPM1P26-001 processed_pseudogene Homo_sapiens 0 547
ENST00000428039 NPM1P24-001 processed_pseudogene Homo_sapiens 0 658
ENST00000429734 NPM1P25-001 processed_pseudogene Homo_sapiens 0 688
ENST00000434232 NPM1P18-001 processed_pseudogene Homo_sapiens 0 514
ENST00000438918 NPM1P33-001 processed_pseudogene Homo_sapiens 0 710
ENST00000444971 CLEC2D-017 nonsense_mediated_decay Homo_sapiens 0 350
ENST00000449818 NPM1P39-001 processed_pseudogene Homo_sapiens 0 739
ENST00000450070 NPM1P19-001 processed_pseudogene Homo_sapiens 0 385
ENST00000458237 NPM1P8-001 processed_pseudogene Homo_sapiens 0 682
ENST00000502784 NPM1P27-001 processed_pseudogene Homo_sapiens 0 758
ENST00000513394 NPM1P21-001 processed_pseudogene Homo_sapiens 0 647
ENST00000517671 NPM1-004 protein_coding Homo_sapiens 0 822
ENST00000518264 NPM1P52-001 processed_pseudogene Homo_sapiens 0 396
ENST00000518587 NPM1-008 retained_intron Homo_sapiens 0 451
ENST00000521088 NPM1P6-001 processed_pseudogene Homo_sapiens 0 776
ENST00000521260 NPM1-009 retained_intron Homo_sapiens 1e-33 147
ENST00000521672 NPM1-005 protein_coding Homo_sapiens 0 375
ENST00000521710 NPM1-010 retained_intron Homo_sapiens 6e-26 121
ENST00000524204 NPM1-012 retained_intron Homo_sapiens 2e-17 94
ENST00000532878 NPM1P50-001 processed_pseudogene Homo_sapiens 0 621
ENST00000533043 NPM1P35-001 processed_pseudogene Homo_sapiens 0 665
ENST00000557228 NPM1P5-001 processed_pseudogene Homo_sapiens 0 545
ENST00000564888 RP11-382N13.3-001 processed_pseudogene Homo_sapiens 0 525
ENST00000583151 NPM1P45-001 processed_pseudogene Homo_sapiens 0 311
ENST00000604799 RP11-681H10.1-001 processed_pseudogene Homo_sapiens 9.80909e-45 182

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