C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FCH and double SH3 domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000522783 FCHSD1-005 ENSG00000197948 9606 - 5:141640987-141651376 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonMuscleOvaryPlacentaTestisENST00000522783
Transcript ID Breast Colon Muscle Ovary Placenta Testis
ENST00000522783 0.559±0.00 0.578±0.00 0.096±0.00 3.316±0.00 1.822±0.49 2.076±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006QE CIL_0006QE_0001 CGP 5:141620876-141641077
CIL_0006QB CIL_0006QB_0001 CGP 5:141636950-141651419
CIL_0002P1 CIL_0002P1_0001 CGP 5:141639302-141682221

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043437 Fchsd1-001 protein_coding Mus_musculus 0 1314
ENSMUST00000163131 Fchsd1-005 protein_coding Mus_musculus 0 520
ENSMUST00000168136 Fchsd1-007 retained_intron Mus_musculus 0 483
ENSMUST00000166148 Fchsd1-009 protein_coding Mus_musculus 0 390
ENSMUST00000164222 Fchsd1-003 nonsense_mediated_decay Mus_musculus 0 248
ENSMUST00000166727 Fchsd1-010 retained_intron Mus_musculus 0 228
ENSMUST00000166973 Fchsd1-006 retained_intron Mus_musculus 2.00386e-43 182
ENSMUST00000165643 Fchsd1-002 retained_intron Mus_musculus 7.00649e-43 180
ENSMUST00000070709 Rell2-001 protein_coding Mus_musculus 4e-25 121
ENSMUST00000177058 Rell2-007 protein_coding Mus_musculus 6e-24 117

Loading