C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GDNF family receptor alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000524240 GFRA2-001 ENSG00000168546 9606 - 8:21690403-21788810 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonOvaryENST00000524240
Transcript ID Adipose Colon Ovary
ENST00000524240 0.119±0.00 0.071±0.00 0.066±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000810 CIL_000810_0001 VISTA 8:21687877-22288944
CIL_0005VE CIL_0005VE_0003 CGP 8:21690403-21913860

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0007169 TAS transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007399 IEA nervous system development
GO:0016167 IEA glial cell-derived neurotrophic factor receptor activity
GO:0019898 TAS extrinsic component of membrane
GO:0031225 IEA anchored component of membrane
GO:0031953 IEA negative regulation of protein autophosphorylation
GO:0035860 IEA glial cell-derived neurotrophic factor receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022699 Gfra2-201 protein_coding Mus_musculus 0 2409
ENSDART00000105709 gfra1b-202 protein_coding Danio_rerio 2e-36 159
ENSDART00000005456 gfra1b-201 protein_coding Danio_rerio 2e-36 159
ENSDART00000150320 gfra1b-001 protein_coding Danio_rerio 2e-36 159
ENSMUST00000169850 Gfra1-201 protein_coding Mus_musculus 4e-33 148
ENSMUST00000129100 Gfra1-004 protein_coding Mus_musculus 4e-33 148
ENSMUST00000140141 Gfra1-003 nonsense_mediated_decay Mus_musculus 4e-33 148
ENSMUST00000152507 Gfra1-002 protein_coding Mus_musculus 4e-33 148
ENSMUST00000026076 Gfra1-001 protein_coding Mus_musculus 4e-33 148

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