C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly-U binding splicing factor 60KDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000527197 PUF60-006 ENSG00000179950 9606 - 8:143816520-143829320 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastHeartKidneyLiverLungMuscleOvaryTestisENST00000527197
Transcript ID Bladder Breast Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000527197 1.056±0.00 2.927±0.00 3.963±3.02 1.433±0.00 11.774±0.00 12.434±0.00 10.462±3.12 11.577±0.00 22.284±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008C2 CIL_0008C2_0001 VISTA 8:143231340-143832399
CIL_0002GT CIL_0002GT_0001 CGP 8:143790920-143829859
CIL_0006FY CIL_0006FY_0002 CGP 8:143816344-143840974

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0006915 IEA apoptotic process
GO:0008380 IEA RNA splicing
GO:0019907 IDA cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0030529 IEA ribonucleoprotein complex
GO:0042802 IPI identical protein binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002599 Puf60-201 protein_coding Mus_musculus 0 1945
ENSMUST00000100527 Puf60-202 protein_coding Mus_musculus 0 1670
ENSDART00000056645 puf60a-201 protein_coding Danio_rerio 0 281
ENSDART00000144613 puf60a-001 protein_coding Danio_rerio 0 281

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